Ppra021733.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621243.1:27313106-27313714[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-07 4.9e-05 24.9 0.1 11 40 34 62 29 65 0.86
Sequence Information
- Coding Sequence
- ATGATAACCGTTGCTTTTTTCGTTCTAGATGCCCAGACAACGTATAAAAAAACTTCAAGAGGCGAGTGTGATATAACTCAGTACGAAAATGCGTATGAAGAAGTCAAAAAAGGGACTTCTTTACGAAAAGCTGCAGAGATGTACGGAGTTCACCATTCTTCTCTTCTGCGATACAAGAAAAAAAGAGATGCAGCGATCGAAGAAGGTAACCAGGCTGATGTTAGTATGGGGTATGTAGCCCACAACCGAGTATTTACCCCTTACCAGGAATTTAAACTGTCAAAATATTTGATCCGCTGTGCGGATATTTACTTTGGTCTATCTGTCAAGGAAGTAAGAAAATTAGCATTCCAGCTCGctgtcaaatataatttaaacacaCCTCCTACGTGGAACGAAAATCAGGTTGCCGGAGAAGAGTGGTTTCGctcttttatgagaagaaatGTGGAATTGTCGGTGCGCACAGCTCAGGCAACCAGTCTCTCCAGGGCAACAAGTTTTAACAAGACCAACGTGGATGCTTTTTACGATCACTTGCAAGTTGTCCTTGACCGTGACAACTTTGAACCACAAGAAGATGTCTTGTGGTTGACGAGACGGGCGTAA
- Protein Sequence
- MITVAFFVLDAQTTYKKTSRGECDITQYENAYEEVKKGTSLRKAAEMYGVHHSSLLRYKKKRDAAIEEGNQADVSMGYVAHNRVFTPYQEFKLSKYLIRCADIYFGLSVKEVRKLAFQLAVKYNLNTPPTWNENQVAGEEWFRSFMRRNVELSVRTAQATSLSRATSFNKTNVDAFYDHLQVVLDRDNFEPQEDVLWLTRRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01027245; iTF_01062738; iTF_00374006; iTF_01440983;
- 90% Identity
- iTF_00374006; iTF_01062738; iTF_01440983;
- 80% Identity
- -