Nfim017975.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- -
- Assembly
- GCA_905163415.1
- Location
- LR990935.1:6827971-6828498[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-08 1.8e-05 25.2 0.1 11 40 25 53 20 56 0.86 2 2 4.7 7.6e+03 -2.3 0.1 12 22 145 156 143 158 0.67
Sequence Information
- Coding Sequence
- ATGCCCAGACaacgtataaaaaaaacttcaagaGGCGAGTGTGATATAACTCAGTACGAAAATGCGTATGAAGAAGTCAAAAAAGGGACTTCTTTACGAAAAGCTGCAGAGATGTACGGAGTTCACCATTCTTCTCTTCTGCGATACAAGAAAAAAAGAGATGCAGCGATCGAAGAAGGTAACCAGGCTGATGTTAGTATGGGGTATGTAGCCCACAACCGAGTATTTACCCCTGACCAGGAAtttaaactgtcaaaatatttgaTCCGCTGTGCGGATATTTACTTTGGTCTATCTGTCAAGGAAGTAAGAAAATTAGCATTCCAGCTCGCtgtcaaatataatttaaacacaCCTCCTACGTGGAACGAAAATCAGGTTGCCGGAGAAGAGTGGTTTCGCTCTTTTATGAGAAGAAATGTGGAATTGTCGGTGCGCACAGCTCAGGCAACCAGTCTCTCCAGGGCAACAAGTTTTAACAAGACCAACGTGGATGCTTTTTACGATAACTTGCAAAGTTGTCCTTGA
- Protein Sequence
- MPRQRIKKTSRGECDITQYENAYEEVKKGTSLRKAAEMYGVHHSSLLRYKKKRDAAIEEGNQADVSMGYVAHNRVFTPDQEFKLSKYLIRCADIYFGLSVKEVRKLAFQLAVKYNLNTPPTWNENQVAGEEWFRSFMRRNVELSVRTAQATSLSRATSFNKTNVDAFYDNLQSCP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264509;
- 90% Identity
- iTF_01264509;
- 80% Identity
- -