Pvib008834.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000100.1:244949-250862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00045 0.043 14.7 1.4 1 23 224 246 224 246 0.97 2 14 3e-05 0.0029 18.4 0.9 1 23 251 273 251 273 0.98 3 14 1.8e-05 0.0017 19.2 1.4 2 20 281 299 280 301 0.93 4 14 0.022 2.2 9.4 0.2 1 23 306 329 306 329 0.97 5 14 0.001 0.096 13.6 0.0 2 23 352 372 351 372 0.96 6 14 4.5e-05 0.0043 17.9 0.0 1 21 378 398 378 399 0.95 7 14 5.7e-07 5.5e-05 23.9 0.5 1 23 406 428 406 428 0.98 8 14 0.00026 0.025 15.5 0.3 1 23 438 461 438 461 0.97 9 14 4.5e-05 0.0043 17.9 1.0 1 23 469 492 469 492 0.97 10 14 0.0012 0.11 13.4 0.7 1 23 499 522 499 522 0.92 11 14 0.00019 0.019 15.9 0.4 1 20 580 599 580 600 0.96 12 14 0.0069 0.66 11.0 0.1 1 23 608 631 608 631 0.90 13 14 0.0057 0.55 11.3 2.5 1 23 636 658 636 658 0.94 14 14 0.18 17 6.6 1.2 5 22 667 684 665 684 0.93
Sequence Information
- Coding Sequence
- ATGTTAATGTATGAAGCGGAACTGGGCATATTTATATTCTCAATATTGTTTATATCAATAGAATTAGGATTATTGACCAACTACTCATCATCATTTTCCATATCCATGGTAATGTTCTACTCTTATGTAGCAATGTATCAAGTCACCGACGATGTTGTGCTCGACCACCAAGCTTGTGCTACCGTCCAAAGGACAGATTGCATTATCGATTCGGTAGCGCAACCTCGACATGTCGGTCCGCCTGAAACCGCCGCCGGTCGCGATCCATCCCACAATGTAGAATCGAACGAGATGTACGTAAATTCTGCCGATCCGGAAGAAATATCAATACACGACGAATTCGAATTATGCGCCGATAAAATTGCGGACAGTTTGATCAAGGTGGAGGTGATGCAGGTCGACGACGATACCGGCGACGGCGGTGAGTCAAAAGAAAATAACAAAGTTTTACCCGACGAATACGAGAAATTCGTCGTACAGTATAATAAAACCGGCATCAAGTACATGCAGTGCGACAAATGCCAATTTATATGTCGACCTTTGGcgcatattttcgaaaaacactACAAAACGCACTTCGACGAAACCGATATCGATGAAAAACCGGATATCAGCTTGTTGCAGCAAATGAACGAGACCTCGGATACGTTCGAAACATCAGAATCGATGTTCGATTGCGATCTGTGTAATGCCAAGTTCAACTCAGAGCGAGCCCTGCATACTCATCAGCGTGTCCATCGAGCCAGAGTGTTCTCCTGCGCCATTTGCGGACTCATCTATAAAACCAAGTTCGAATTGAAGGTTCATAAGAAAACTCACGCTTCCGAGGTCGTCGTATTGGTCTGCAACATGTGCGGCAAAAGTTTCAAAACCAAGTCTGGCTACAATCATCATCGTACCAATGTCTGCGTCGAGTATAAATGCGAAATCTGCGGAGATATGTTTCTCGTCAAGTCTGTCCTGCAAGATCACCTGAAAAAAGTGCACGAAATCGAAGAAGATATTTCGGTGGTTGAGCCGGAGCAAGTCTCCAGGAAGGAGCAGGTCAGCAGCGTGTGTCCCGTTTGTGGCAAAGTGGTCACCGAGAATGCCCTGTCTCGTCATATGAACCTACATTCCGAAGACAAACCGTACATTTGCGACCTTTGTGGCAAGTCGTTCCGTATCAAGTGGTCCCTCAGAGAACATATTATGATCGAGATCGGCATGAAAGACTACGTTTGCGAAATCTGCGGCAAGAAATTCGTGATCCAGGCGTACCTGAATAAACACATGAGATTCCATATGATGTGCGACGGTAAATTCGAAGGATACCAGTGCGAAATCTGCGGCAAAAAGTACGCCGAGGAGTGGAAAGTCAAAGAGCACCAGCGAAATTCGCACAAAGGCAAGAATCCAATGCAGTACAAATGCGACATCTGCGATAAAAAGTACGCTCGGAAATGGCTGGTTAAATCGCATAAAAGACAAGCCCACAAAGACCACATGGAAGAATACCAATGCGAGTACTGCGACAAGAAGTTTACCGAGAAATGGATCATCAAGCTGCATCTGCAAACTGTTCACAATTTGACTAACTTCACCGAAGAGAATGCCAATTCACCCGCCACCAATAAAGCTACCTCCgacgaattagaaaaattactcgAGTACCATCAAAGGATATCCTGCGACGAAAAGAAACCCCCCAAGATGGAAGATTCGGCCTCGGAGGAAGGTAAACCGCGTCGTAAACTGTTCGAATGCGAACTCTGCGGAAAGAAGTTCGCCACCAAACAAGGTATGAAGAATCATTTATACGCTGAACTCAATATGCGCAAGTACGTTTGCGAAATATGCGGCAAAAGGTATAATTGGTGGATGGGTTTGAAAGAGCATTCGATCATGAATCACGGAGCGAAGGAGTTCGTGTGTGATTATTGTGGTAAAGATTTTCCAACCAAGAAACGTTGCCGAGATCATTTATCCGTCCATTCGGACGTTAGACCTTTTAATTGTAAATGCGGAAATTCGTTCAAGTTAAGGAGGTATTTGGCTAAACATCAGAAAAGATGCGGTAAGGCTATTAAAAAAGAGTAG
- Protein Sequence
- MLMYEAELGIFIFSILFISIELGLLTNYSSSFSISMVMFYSYVAMYQVTDDVVLDHQACATVQRTDCIIDSVAQPRHVGPPETAAGRDPSHNVESNEMYVNSADPEEISIHDEFELCADKIADSLIKVEVMQVDDDTGDGGESKENNKVLPDEYEKFVVQYNKTGIKYMQCDKCQFICRPLAHIFEKHYKTHFDETDIDEKPDISLLQQMNETSDTFETSESMFDCDLCNAKFNSERALHTHQRVHRARVFSCAICGLIYKTKFELKVHKKTHASEVVVLVCNMCGKSFKTKSGYNHHRTNVCVEYKCEICGDMFLVKSVLQDHLKKVHEIEEDISVVEPEQVSRKEQVSSVCPVCGKVVTENALSRHMNLHSEDKPYICDLCGKSFRIKWSLREHIMIEIGMKDYVCEICGKKFVIQAYLNKHMRFHMMCDGKFEGYQCEICGKKYAEEWKVKEHQRNSHKGKNPMQYKCDICDKKYARKWLVKSHKRQAHKDHMEEYQCEYCDKKFTEKWIIKLHLQTVHNLTNFTEENANSPATNKATSDELEKLLEYHQRISCDEKKPPKMEDSASEEGKPRRKLFECELCGKKFATKQGMKNHLYAELNMRKYVCEICGKRYNWWMGLKEHSIMNHGAKEFVCDYCGKDFPTKKRCRDHLSVHSDVRPFNCKCGNSFKLRRYLAKHQKRCGKAIKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01262786; iTF_00725752;
- 90% Identity
- -
- 80% Identity
- -