Plon012983.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01040240.1:3050-5222[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0018 0.17 12.8 4.1 1 23 211 233 211 233 0.98 2 14 2.8e-05 0.0027 18.5 0.9 1 23 238 260 238 260 0.98 3 14 1.6e-05 0.0016 19.2 1.4 2 20 268 286 267 288 0.93 4 14 0.021 2 9.4 0.2 1 23 293 316 293 316 0.97 5 14 0.00094 0.089 13.7 0.0 2 23 339 359 338 359 0.96 6 14 4.2e-05 0.004 17.9 0.0 1 21 365 385 365 386 0.95 7 14 5.3e-07 5.1e-05 23.9 0.5 1 23 393 415 393 415 0.98 8 14 0.00033 0.031 15.1 0.3 1 23 425 448 425 448 0.97 9 14 4.2e-05 0.004 17.9 1.0 1 23 456 479 456 479 0.97 10 14 0.0011 0.11 13.4 0.7 1 23 486 509 486 509 0.92 11 14 0.00016 0.016 16.1 0.2 1 20 567 586 567 587 0.96 12 14 0.0065 0.61 11.0 0.1 1 23 595 618 595 618 0.90 13 14 0.015 1.5 9.9 4.1 1 23 623 645 623 645 0.94 14 14 0.17 16 6.6 1.2 5 22 654 671 652 671 0.93
Sequence Information
- Coding Sequence
- ATGCAAGAGACGCAGAAGCTGAGTCAGCCAATCAATGGCGGAATTTTGTGTTTCAAAGAAGGGTATCAAGTCACCGACGATGTTGTGCTCGACCAACAACAAAGTACTACCGTCGAGAGGACATGCATTATCGAATCGGTAGAGCAACCTCGAGAACATCTCGGTCCGTCGCAACAAAACACCGCCGGCTGTGCACCTTCCTACAATGTAGAATCGAGCGGTAACCTGCCGCCAGATGAGACGATGTACGTAGATTGCCACATGTCTGCCGACCCGGACCAATTATCTGTACATGACGAATTCGAATTATGCGGTGATAAAATGGACGTGAGTCTGATCAAGGTGGAAGTGATGCAAGTCGACGATGATAGCGGCGACGGCGGTGAGtcgaaagaaaataataaagttTTACCGAACGAATACGAGAAATTCGTCGTGCAATATAATAAAACGGGTATCAAGTACATGCAGTGCGACAAATGCCAATTTATATGTCGACCTTTGGCTCATATTTTCGAAAGACACTACAAAACTCATTTCGACGAAACCGATATCGACGAGAAACCAGATATCGCCATTTTGCAGCACATGAGTCAGGTCTCAGAGACGTTCGAAGAACCAGAGTCGATATTCAATTGCGATCTTTGTAACGCCAAGTTCTGCTCCGAGCGAGCCTTGCATACGCACCAGCGTATCCATCGAGCCCGGGTGTTCTCATGCGCTATATGCGGACTCATATACAAAACCAAGTTCGAATTAAAGGTGCATAAGAAAACTCACGCTTCGCAGGTCGTATCGTTGGTTTGTAACATGTGCggcaaaagtttcaaaaccaAGTCTGGCTACAATCATCATCGTACCAATGTCTGCGTGGAGTACAAATGCGAAATTTGCGGTGATATGTTTCTGGTCAAGTCCGTCCTGCAAGATCATCTAAAGAAGGTGCACGATATCGAAGAAGACATCTCGCTGGTCGAGCCGGAGCCAGCGCCTAGGAAAGAACAGGTTAGCAGTGTGTGCCCGGTGTGTGGCAAGGTAGTGACGGAGAACGCGTTGTCGCGACATATGAATCTGCATTCCGAAGATAAACCCTACATTTGCGACCTTTGCGGTAAATCGTTTCGTATCAAATGGTCCCTCCGAGAACACATCATGATCGAAATCGGCATGAAGGACTACGTTTGCGAAATCTGCGGCAAGAAGTTCGTCATCCAGGCATACCTGAACAAGCATATGCGTTTCCATATGATGTGCGAAGGTAAATTCGAAGGATTCCAATGCGAAATCTGCGGCAAAAAGTACGCCGAAGAGTGGAAAGTCAAGGAGCACCAGCGTAATTCCCACAAAGGCAAGAATCCGATGCAGTACAAGTGCGACATATGCGATAAGAAGTATGCTCGCAAGTGGCTGGTCAAGTCGCACAAAAGGCAAGCCCATAAAGATCATTTGGAAGAATACCAATGCGATTACTGCGATAAGAAGTTTACTGAGAAATGGATCATCAAGTTACATCTGCAAACTGTACATAATATGAATAACTCGAACGAAGATAACGCTAATTCGCCGGCTACTCATAAGGTTACCTCGGATGAACTAGAGAAACTGCTCGAGTACCATCAGAAGATATCTTGTGACGAAGTGAAAGACCCCAAGATGGAAGATTCGATGGATGAGGAAGGTAAACAGCGTCGTAAACCATTCGAATGCGAACTCTGTGGCAAGATGTTCGCCACCAAGCAAGGTATGAAGAATCATTTATACGCTGAACTGAATATGCGCAAGTACGTTTGCGAAATCTGCGGCAAAAGGTATAATTGGTGGATGGGTTTAAAAGAACACTCGATTATGAATCACGGCGCCAAAGAATTCGTGTGCGATCATTGCGGCAAAGATTTCCCAACTAAGAAACGGTGCCGAGATCATTTATCTGTTCATTCGGACGATAGACCTTTTAATTGTAAATGCGGAAATTCGTTCAAGTTGAGGAGGTATTTGGCCAAGCATCAGAAACGATGCGgtaaaactattaaaaaagaGTTAGATTAG
- Protein Sequence
- MQETQKLSQPINGGILCFKEGYQVTDDVVLDQQQSTTVERTCIIESVEQPREHLGPSQQNTAGCAPSYNVESSGNLPPDETMYVDCHMSADPDQLSVHDEFELCGDKMDVSLIKVEVMQVDDDSGDGGESKENNKVLPNEYEKFVVQYNKTGIKYMQCDKCQFICRPLAHIFERHYKTHFDETDIDEKPDIAILQHMSQVSETFEEPESIFNCDLCNAKFCSERALHTHQRIHRARVFSCAICGLIYKTKFELKVHKKTHASQVVSLVCNMCGKSFKTKSGYNHHRTNVCVEYKCEICGDMFLVKSVLQDHLKKVHDIEEDISLVEPEPAPRKEQVSSVCPVCGKVVTENALSRHMNLHSEDKPYICDLCGKSFRIKWSLREHIMIEIGMKDYVCEICGKKFVIQAYLNKHMRFHMMCEGKFEGFQCEICGKKYAEEWKVKEHQRNSHKGKNPMQYKCDICDKKYARKWLVKSHKRQAHKDHLEEYQCDYCDKKFTEKWIIKLHLQTVHNMNNSNEDNANSPATHKVTSDELEKLLEYHQKISCDEVKDPKMEDSMDEEGKQRRKPFECELCGKMFATKQGMKNHLYAELNMRKYVCEICGKRYNWWMGLKEHSIMNHGAKEFVCDHCGKDFPTKKRCRDHLSVHSDDRPFNCKCGNSFKLRRYLAKHQKRCGKTIKKELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263828;
- 90% Identity
- -
- 80% Identity
- -