Pvib004954.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000046.1:470578-477932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.4 38 5.5 0.3 1 23 31 54 31 54 0.96 2 30 0.00046 0.044 14.7 3.2 1 23 57 79 57 79 0.97 3 30 0.0022 0.21 12.5 1.0 1 23 85 108 85 108 0.96 4 30 0.0044 0.42 11.6 0.6 1 23 116 138 116 138 0.97 5 30 2.8e-06 0.00027 21.7 0.6 1 23 144 166 144 166 0.97 6 30 3.3e-05 0.0032 18.3 0.6 1 23 172 195 172 195 0.98 7 30 3.5e-05 0.0033 18.2 1.9 1 23 201 223 201 223 0.98 8 30 9.6e-06 0.00093 20.0 0.1 2 23 231 252 230 252 0.97 9 30 0.00015 0.015 16.2 0.3 1 23 258 280 258 280 0.96 10 30 0.00012 0.011 16.6 0.4 1 23 286 308 286 308 0.98 11 30 0.055 5.3 8.2 3.5 1 23 349 372 349 372 0.94 12 30 6.4e-08 6.2e-06 26.8 0.3 1 23 375 397 375 397 0.98 13 30 8.4e-06 0.00081 20.2 1.0 1 23 403 426 403 426 0.98 14 30 0.0081 0.78 10.8 1.1 2 23 436 457 435 457 0.97 15 30 2.4e-05 0.0023 18.7 3.3 1 23 463 485 463 485 0.97 16 30 2.1e-06 0.0002 22.1 1.1 1 23 491 514 491 514 0.96 17 30 2.8e-06 0.00027 21.7 2.5 1 23 520 542 520 542 0.98 18 30 0.00017 0.016 16.1 2.5 1 23 549 571 549 571 0.97 19 30 7.3e-05 0.0071 17.2 1.7 1 23 577 599 577 599 0.95 20 30 4.5e-05 0.0043 17.9 2.6 1 23 605 627 605 627 0.98 21 30 0.57 55 5.0 1.3 2 23 652 674 651 674 0.94 22 30 5.3e-05 0.0051 17.7 1.7 1 23 677 699 677 699 0.98 23 30 2.2e-05 0.0021 18.9 0.7 1 23 705 728 705 728 0.97 24 30 0.00013 0.012 16.5 0.5 1 23 765 787 765 787 0.98 25 30 4.9e-06 0.00047 20.9 1.6 1 23 793 816 793 816 0.98 26 30 2.8e-05 0.0027 18.5 4.4 1 23 822 845 822 845 0.97 27 30 6.1e-05 0.0059 17.5 0.3 1 23 854 876 854 876 0.98 28 30 0.00018 0.018 16.0 2.5 1 23 882 904 882 904 0.95 29 30 2.7e-05 0.0026 18.6 0.6 1 23 910 932 910 932 0.98 30 30 0.12 12 7.1 11.4 1 23 939 961 939 962 0.95
Sequence Information
- Coding Sequence
- ATGTCCAAGAACGAAGACACTGATATGTCGGCGGAAAAATTTCTGGACATGATATTAGTTAAAGCCGAACCGAAACCGGATAACAATCCGTACTCGTGCGTTATTTGCGGAGAAGATTGCCTaaacgaggaaaaattattcgaacatGCTCGAGTCCAACACAAATCCCACAAATGTCCATTCTGTAATAAAATCTTCGCTCACAGATACGTGCTGGAGAACCACTTGTACGTGCACACGGATAAACGGAAACATCCTTGCTCTCAGTGTGCTCTGTCTTTCAAACGTGAAGTCGATCTGTTGAATCATGTGAAACGAACTCACGCCAGGACTGAAATAGTTCTATACAGATGTGATAAATGCGATTATACCTCTAAAAATCGATTCGGTATCAAGGTGCATATCTTGGCCCACGATGGAATTTCCATATACAATTGTGACGAATGTGGTAAAGGATTCAGTACAAAAGCTGGACTGAGGACGCATAAAAATAATCACATGGGTATTAAACCATTCCAGTGTGATATTTGTGGAAATAGTTTTACCAGAGGGCCATATTTGAAACAGCATCGGAAAATGGTCCATGAGAATCCTCACTCGTTCAAATGTGATATCTGTTACAGAggattttcgttaaaatccacgctgaaaaatcatttgaagCTGCACACCGGAGAGAATAAAATTATCACGTGTGATGTTTGTGGTAAAACTGTATCCAGTAGGAATGCCCTAATAAATCACCAAAGAATACACACAGGAGATAAAAGATTCTCGTGTAACATTTGTGGTAAAGCTTACGTTACCAAATTACAAGTTAAAAGACACGCTTACGTACATACTGGTGAGAAACCATTCTCGTGTGACGTCTGCCAGAAAAAATTAGCCACTGGGAGCAGCCTGGTGCAGCATATGAAAACACACTGGGAAAATCGCGCCTTATATTCTTGCAACATTTGTAGCAAGCAGGAGACCAAACCTCAGAATGCGGTTTCAAACAATATCGATATTTCTGATAACGAACCTGAGGATTTTAAGAACTTCCACAACTGTCACTTGTGTTACAAAGTCTATCAAAAAGAAGAAGAGCTAAAAGAACATTTAACCTCAATGCATCGCTGCTTCAAATGTCCCATCTGTCAAAAAAGTTTCGCCCGACCTGCCAACTTACGTTACCACTTGAACGTTCATAAAGAATTTAGAAACTTTAAGTGCGAAAAATgcggacaatttttcaaatccgcCAACGACGTTAAAGTACACATGAAACGCGTACACGTCGACCCGAAAACAGTAGTGCTACTTAAATGTACCCAATGCGAGTACCAGACACCTTATCAAAGCCGGCTTACTAGACATACGATGATACACACCGGTACTTATTTGCATTACTGCGAAGAATGCGGCAAAGGATTCAATCACTCGTTAGATTTACGTACCCACATCAATAAACATAAAGGATTGAGACCTTATCAATGCGAAATCtgcggtaaaaatttcaatcgcgAATCGTACATGAAACGACATCGTGATTCCGTCCATGTTGCACCGTATTCCTACGAATGTGCCTATTGCCAGAAGAGATTCTCGTTTAAGTATTCTCTCAAATCTCACATCAAAGTACATCTAGGAATCGTCACTATGTACgattgtaatttttgtgataaaaaattatccacgAAGATGTCGCTTCGTAATCACACCAGACTTCATACTGATGAAAAACCTTTCCAATGTGAAATTTGTAGTAAACGGTATACAACTAATGGCGAACTGAAGACCCATTCGTTTAGCCATGTCGATGAAAAACCGCACAAATGCGAAATTTGCAAGAAAACTTTCAGAGCTGCGTTTATGCTGAAGAATCATATGACCATTCACGAaacaaaatcaTCGAAACCTCGAGACACCGCAGTCGATAATTTTATACCACTGAATGCTGAAATCGAACTGATTTGTACTCTCTGCGACGAACACTTTCTCACTGACTCGACCATTAATAGCCACATGAAACTGAAACACCGTGTATATCGATGCGACATttgcgaaaaattattcaaacaaaGATCTTCGCTAGCCTATCACAAATCCACTCACAGTTCGGTTCGAAGCTATAAATGCGAACAATGTGACATTTCGTTCAAACGAACCACAGATCTGAAGGGTCATATAAGCAGGGTACACGAAGAAGTAAAGgaatcagattttaaaaaatgttcggtCTGCGGTTTCAAAACGAAATGTCGTCGGCGTTATGAAATTCACGTACTGAGCCACGTTGGGTCTTTTTTATACTACTGCGACCAGTGTGGTAAAGGATTTAACGATACGTTAGGATTAAGAACTCATTTGAATAATCACTTAGGCATTAAGCCATTCCAATGCGACGTGTGTGGCAAAAAATTCACCAGGGAGCCGTACATGAAGCAGCATCGTCGTAAAGTACACGAACAACCGTTGTCGTTTGAATGTGATATGTGTGGGAAAAAGTTCTCGTTCAAATGTTCGCTGACTAAGCATTTGAGTAAGGAGCACATTGATAAAGATAAAATAGAGGAGTACCAGTGTCCTGTATGCGAGCGTATGATCAAAAGTAAACCATCGTTGAGGAATCATATCAAACTGCATACCGGAGAGAAGCCTTTCTCGTGTACCGAATGTTCGAAAATGTTTGCGACCAAGTTGCAGCTCCAAAGGCATTCGTTCAGGCATTCGGATTATAAGGCTTTTCAATGcgaaatttgcaaaaaagggTTCGCTTATAAACGTTTATTAGTTATTCATAGGAAAATTCATCAAGAAGATAGAACACGACATTCTTGTCATCATTGCGGTAATCAGTATTTTTCGAAACATAAATTAATAGCTCATATCAAAAGGCATCATTTGAATAAGATAAAAACTGAAAAGCGATGA
- Protein Sequence
- MSKNEDTDMSAEKFLDMILVKAEPKPDNNPYSCVICGEDCLNEEKLFEHARVQHKSHKCPFCNKIFAHRYVLENHLYVHTDKRKHPCSQCALSFKREVDLLNHVKRTHARTEIVLYRCDKCDYTSKNRFGIKVHILAHDGISIYNCDECGKGFSTKAGLRTHKNNHMGIKPFQCDICGNSFTRGPYLKQHRKMVHENPHSFKCDICYRGFSLKSTLKNHLKLHTGENKIITCDVCGKTVSSRNALINHQRIHTGDKRFSCNICGKAYVTKLQVKRHAYVHTGEKPFSCDVCQKKLATGSSLVQHMKTHWENRALYSCNICSKQETKPQNAVSNNIDISDNEPEDFKNFHNCHLCYKVYQKEEELKEHLTSMHRCFKCPICQKSFARPANLRYHLNVHKEFRNFKCEKCGQFFKSANDVKVHMKRVHVDPKTVVLLKCTQCEYQTPYQSRLTRHTMIHTGTYLHYCEECGKGFNHSLDLRTHINKHKGLRPYQCEICGKNFNRESYMKRHRDSVHVAPYSYECAYCQKRFSFKYSLKSHIKVHLGIVTMYDCNFCDKKLSTKMSLRNHTRLHTDEKPFQCEICSKRYTTNGELKTHSFSHVDEKPHKCEICKKTFRAAFMLKNHMTIHETKSSKPRDTAVDNFIPLNAEIELICTLCDEHFLTDSTINSHMKLKHRVYRCDICEKLFKQRSSLAYHKSTHSSVRSYKCEQCDISFKRTTDLKGHISRVHEEVKESDFKKCSVCGFKTKCRRRYEIHVLSHVGSFLYYCDQCGKGFNDTLGLRTHLNNHLGIKPFQCDVCGKKFTREPYMKQHRRKVHEQPLSFECDMCGKKFSFKCSLTKHLSKEHIDKDKIEEYQCPVCERMIKSKPSLRNHIKLHTGEKPFSCTECSKMFATKLQLQRHSFRHSDYKAFQCEICKKGFAYKRLLVIHRKIHQEDRTRHSCHHCGNQYFSKHKLIAHIKRHHLNKIKTEKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150628;
- 90% Identity
- -
- 80% Identity
- -