Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01046915.1:3010-6961[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.013 1 10.2 0.1 1 23 31 54 31 54 0.97

2 30 0.00031 0.025 15.3 3.3 1 23 57 79 57 79 0.97

3 30 0.0023 0.18 12.5 1.0 1 23 85 108 85 108 0.96

4 30 0.0053 0.42 11.4 0.6 1 23 116 138 116 138 0.97

5 30 3e-06 0.00024 21.6 1.0 1 23 144 166 144 166 0.97

6 30 5.1e-05 0.0041 17.7 0.6 1 23 172 195 172 195 0.97

7 30 6.4e-05 0.0051 17.4 1.8 1 23 201 223 201 223 0.98

8 30 1.2e-05 0.00094 19.7 0.2 2 23 231 252 230 252 0.97

9 30 0.00014 0.012 16.3 0.7 1 23 258 280 258 280 0.94

10 30 6.7e-05 0.0053 17.4 1.5 1 23 286 308 286 308 0.98

11 30 0.13 10 7.0 0.5 1 15 315 329 315 329 0.91

12 30 0.0021 0.16 12.7 2.8 1 23 353 376 353 376 0.96

13 30 3.8e-08 3.1e-06 27.6 1.0 1 23 379 401 379 401 0.99

14 30 0.00092 0.073 13.8 0.7 2 23 408 430 407 430 0.97

15 30 0.022 1.8 9.4 2.9 1 23 439 461 439 461 0.98

16 30 3.2e-05 0.0025 18.4 2.5 1 23 467 489 467 489 0.97

17 30 9.4e-06 0.00075 20.0 0.6 1 20 495 514 495 515 0.96

18 30 4.1e-06 0.00033 21.2 2.6 1 23 524 546 524 546 0.98

19 30 8.7e-05 0.0069 17.0 1.7 1 23 553 575 553 575 0.98

20 30 2.2e-05 0.0017 18.9 1.5 1 23 581 603 581 603 0.95

21 30 0.0087 0.69 10.7 3.6 1 23 609 631 609 631 0.98

22 30 0.024 1.9 9.3 0.1 2 23 662 684 661 684 0.95

23 30 5.5e-05 0.0043 17.6 1.0 1 23 687 709 687 709 0.97

24 30 3.8e-05 0.003 18.1 1.0 1 23 715 738 715 738 0.97

25 30 4.3e-05 0.0035 18.0 0.2 1 23 775 797 775 797 0.98

26 30 5.1e-06 0.0004 20.9 1.6 1 23 803 826 803 826 0.98

27 30 3e-05 0.0024 18.5 4.4 1 23 832 855 832 855 0.97

28 30 5.3e-05 0.0042 17.7 0.2 1 23 864 886 864 886 0.98

29 30 0.00019 0.015 16.0 2.5 1 23 892 914 892 914 0.95

30 30 1.2e-05 0.00098 19.7 0.6 1 23 920 942 920 942 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.013	1	10.2	0.1	1	23	31	54	31	54	0.97
2	30	0.00031	0.025	15.3	3.3	1	23	57	79	57	79	0.97
3	30	0.0023	0.18	12.5	1.0	1	23	85	108	85	108	0.96
4	30	0.0053	0.42	11.4	0.6	1	23	116	138	116	138	0.97
5	30	3e-06	0.00024	21.6	1.0	1	23	144	166	144	166	0.97
6	30	5.1e-05	0.0041	17.7	0.6	1	23	172	195	172	195	0.97
7	30	6.4e-05	0.0051	17.4	1.8	1	23	201	223	201	223	0.98
8	30	1.2e-05	0.00094	19.7	0.2	2	23	231	252	230	252	0.97
9	30	0.00014	0.012	16.3	0.7	1	23	258	280	258	280	0.94
10	30	6.7e-05	0.0053	17.4	1.5	1	23	286	308	286	308	0.98
11	30	0.13	10	7.0	0.5	1	15	315	329	315	329	0.91
12	30	0.0021	0.16	12.7	2.8	1	23	353	376	353	376	0.96
13	30	3.8e-08	3.1e-06	27.6	1.0	1	23	379	401	379	401	0.99
14	30	0.00092	0.073	13.8	0.7	2	23	408	430	407	430	0.97
15	30	0.022	1.8	9.4	2.9	1	23	439	461	439	461	0.98
16	30	3.2e-05	0.0025	18.4	2.5	1	23	467	489	467	489	0.97
17	30	9.4e-06	0.00075	20.0	0.6	1	20	495	514	495	515	0.96
18	30	4.1e-06	0.00033	21.2	2.6	1	23	524	546	524	546	0.98
19	30	8.7e-05	0.0069	17.0	1.7	1	23	553	575	553	575	0.98
20	30	2.2e-05	0.0017	18.9	1.5	1	23	581	603	581	603	0.95
21	30	0.0087	0.69	10.7	3.6	1	23	609	631	609	631	0.98
22	30	0.024	1.9	9.3	0.1	2	23	662	684	661	684	0.95
23	30	5.5e-05	0.0043	17.6	1.0	1	23	687	709	687	709	0.97
24	30	3.8e-05	0.003	18.1	1.0	1	23	715	738	715	738	0.97
25	30	4.3e-05	0.0035	18.0	0.2	1	23	775	797	775	797	0.98
26	30	5.1e-06	0.0004	20.9	1.6	1	23	803	826	803	826	0.98
27	30	3e-05	0.0024	18.5	4.4	1	23	832	855	832	855	0.97
28	30	5.3e-05	0.0042	17.7	0.2	1	23	864	886	864	886	0.98
29	30	0.00019	0.015	16.0	2.5	1	23	892	914	892	914	0.95
30	30	1.2e-05	0.00098	19.7	0.6	1	23	920	942	920	942	0.99

Sequence Information

Coding Sequence: ATGTCAAAGAACGAAGACACTGATATGTCAGCGGAAAAATTTCTGGACATGATATTAGTTAAAGCTGAACCGAAACCGGATAACAATCCGTTCTCGTGTGTTGTATGCGGAGAAGATTGCGTAAACGAAGACAAATTAGTCGAACACGCCCGAGTTCAGCATAAATCTCACAAATGCCCATTctgcaacaaaatttttgctcataaatatGTTCTGGAGAATCACTTGTACGTTCACACGGATAAACGTAAACATCCATGTTCCCAATGTGCACTTTCTTTCAAACGTGAGGTTGATCTGCTGAATCATGTGAAACGAACTCACGCTCGAACTGAACTTGTCCTATATCGATGTGACAAGTGTGATTACACGTCTAGAAATCGATTCGGTATCAAAATACATATCCTGGCTCATGACGGTATTTCCATTTACAATTGCGACGAATGCGGTAAAGGATTCAACTCGAAATCTGGATTAAGGACGCACAAAAATAATCACTTGGGAATTAAACCGTTTCAGTGCGACATTTGTGGAAACAGTTTTACCAGAGGACCGTATTTGAAACAACATCGCCAAATGATGCACGAAAATCCTAATTCGTTCAAATGCGACGTTTGTTACAGaggattttctttgaaatccacgctgaaaaatcatttaaaattgcacaccggtgaaaataaaaacgtcaCTTGTGATATGTGTGGAAAAACTGTGTCTAGTAGGAATGCTCTTATAAATCATCAAAGAATTCATACAGGAGATAAACGATTCTCTTGCAATATCTGCGGCAAATCGTACGTTACGAAATTACAAGTGAAAAGACACGCCTACCTACACACCGGCGAAAAACCATTCTCGTGTAATATTTGCCATAAAAAGTTGGCCACCGGAAGCAGCCTTGTACAGCATATGCAAACTCACTGGGATAACCGAGCCTTATATTCTTGCAATATTTGCAACAAGCAATACATCTCCAAGGAGAACAAACCACAGGCGAAGGCTTCAAACACTATTGAAATTTATGAGAACGAACTTGAGGATTTTAAGAATTCCTTCAACTGTCATTTGTGTTACAAAGTCTTCCAGAAAGAAGACGAGCTAAACCAGCATTTGACGAAAATGCATCGCTGCTTCAAATGTCCGATTTGTCAAAAAAGCTTCGGTAGAGCTGCTAATTTACGACACCACATGAATGTGCATAAAGAATTTAAGAATGTAAAATGTGAAAAGTGCGGatcgtttttcaaatctatGAACGACGTAAAAGCACATATGAAACGTGTGCACTTGGATCCCAAGACGGTAATATTCCACAAGTGTTCGCAGTGCGAGTATCGAACGCCTTATCTTAGCCGACTTAATAGGCATACAATGATACACACGGGTACGTATTTGCATTACTGCGAAGAATGTGGAAAAGGGTTCAACCATTCGTTAGACTTGCAAACGCACATCAATAATCATAAAGGACTGAAGCCTTACCAGTGTGAAATTTgcgggaaaaattttaatagagAGTCGTACATGAAAAGGCATCGCGATTGTGTTCACGTTCAACCGCATTCGTTCGAATGCGCCTATTGCCAGAAAcgattttcgttcaaatattCCTTAAAGTCTCATATCAAAGTTCATCTCGGAATAGCCACCTATTACCGCTGTGATCGGTGCGATAAACGATTATCCACCAGGATGTCTTTGCGTAATCATGTTCGATTACATACTGACGATAAACCTTACCAGTGTGAGATTTGCAACAAACGATACACCACTAATGGCGAGTTGAAATCACATTCATTTAGTCatattgatgaaaaaccaTATAAATGCGAATGTTGCACGAAAACATTTCGAGCTGCATTTATGCTGAAAAATCATATGACCATCCATGAGAAATGTAGATCGCAGATTAAAGCAAAACCTaaaaaagaagatgaaaaaatcgacaattttgtagaaatgaagGAGGGCGCTGAAATGAAATGTACTATCTgcgatgagatttttttcaacgatccTGCCATTAATAATCATATGAAAGCGAAACATCGTGTGTACCGATGTGATATCtgcgaaaaattgttcaagcAACAATCTTCTCTAGCATATCATAAATCCATTCATAGTTCGATCCGAAGTTATACATGTGACCGTTGcaatatttcttttaaaagaaaaacagatCTTAGAGGCCATGTAAACAGAGTGCACGAAGAAGTTAAAGaatctgattttaaaaaatgttccgTGTGCGATTTCAGAACGAAATGTCGTCGCCGATACGAAATTCACGTATTGAGTCATGTGGGATCTTATTTATACTACTGTGACCAGTGCGGCAAAGGATTCAATGATGCCTTAGGTTTAAGAACACACTTAAATAATCATTTGGGTATTAAACCATTTCAGTGTGACGTATgcggtaaaaaattcaccagagaACCGTACATGAAACAGCATCGTCGCAAAGTTCACGAACAACCACTTTCATTCGAATGTGACATGTGTGGGAAGAAATTCTCTTTCAAATGCTCTCTAACGAAGCATTTGAGTAAAGATCATATCGACAAGGATAAAACTGAAGAATATCAATGCCCGTTATGCCCACGAATGATTAAAAGCAAACCGTCGTTAAGGAATCATATTAAACTTCACACCGGAGAAAAACCTTTCTCTTGCACCGAATGTTCGAAAATGTTTGCCACCAAATTACAGCTTCAACGACATTCGTTCAGGCATTCAGATTATAGAGCCTTTCAATGCGAGATTTGTAAAAAAGGTTTCGCCTACAAACGTTTATTAGTTATTCATAGAAGAATTCATCAGGAAGATAGAGCACGACATTCTTGCCATCATTGCGGTAATCAGTACCTATCGAAACATAAATTAATTGGTCATATACAACGGCaccatttcaatttcaaaggcaatatcaaaattgaaaagtaa
Protein Sequence: MSKNEDTDMSAEKFLDMILVKAEPKPDNNPFSCVVCGEDCVNEDKLVEHARVQHKSHKCPFCNKIFAHKYVLENHLYVHTDKRKHPCSQCALSFKREVDLLNHVKRTHARTELVLYRCDKCDYTSRNRFGIKIHILAHDGISIYNCDECGKGFNSKSGLRTHKNNHLGIKPFQCDICGNSFTRGPYLKQHRQMMHENPNSFKCDVCYRGFSLKSTLKNHLKLHTGENKNVTCDMCGKTVSSRNALINHQRIHTGDKRFSCNICGKSYVTKLQVKRHAYLHTGEKPFSCNICHKKLATGSSLVQHMQTHWDNRALYSCNICNKQYISKENKPQAKASNTIEIYENELEDFKNSFNCHLCYKVFQKEDELNQHLTKMHRCFKCPICQKSFGRAANLRHHMNVHKEFKNVKCEKCGSFFKSMNDVKAHMKRVHLDPKTVIFHKCSQCEYRTPYLSRLNRHTMIHTGTYLHYCEECGKGFNHSLDLQTHINNHKGLKPYQCEICGKNFNRESYMKRHRDCVHVQPHSFECAYCQKRFSFKYSLKSHIKVHLGIATYYRCDRCDKRLSTRMSLRNHVRLHTDDKPYQCEICNKRYTTNGELKSHSFSHIDEKPYKCECCTKTFRAAFMLKNHMTIHEKCRSQIKAKPKKEDEKIDNFVEMKEGAEMKCTICDEIFFNDPAINNHMKAKHRVYRCDICEKLFKQQSSLAYHKSIHSSIRSYTCDRCNISFKRKTDLRGHVNRVHEEVKESDFKKCSVCDFRTKCRRRYEIHVLSHVGSYLYYCDQCGKGFNDALGLRTHLNNHLGIKPFQCDVCGKKFTREPYMKQHRRKVHEQPLSFECDMCGKKFSFKCSLTKHLSKDHIDKDKTEEYQCPLCPRMIKSKPSLRNHIKLHTGEKPFSCTECSKMFATKLQLQRHSFRHSDYRAFQCEICKKGFAYKRLLVIHRRIHQEDRARHSCHHCGNQYLSKHKLIGHIQRHHFNFKGNIKIEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01263806;
90% Identity: -
80% Identity: -