Pvib008458.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus viburni
Gene Symbol
PZF1
Assembly
GCA_033439095.1
Location
JAVBJF010000094.1:903755-907973[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 1.9e-05 0.0019 19.0 2.3 1 23 121 143 121 143 0.97
2 35 4.5e-06 0.00043 21.0 1.0 1 23 177 199 177 199 0.97
3 35 1.3e-05 0.0013 19.5 1.8 1 23 215 237 215 237 0.98
4 35 0.01 0.97 10.5 0.6 1 23 242 264 242 264 0.97
5 35 0.0019 0.19 12.7 1.9 1 20 270 289 270 292 0.92
6 35 0.99 95 4.2 8.4 1 23 297 319 297 319 0.93
7 35 0.023 2.2 9.4 4.0 1 23 325 346 325 346 0.97
8 35 0.00061 0.059 14.3 0.6 1 23 447 469 447 469 0.98
9 35 9.2e-05 0.0089 16.9 5.0 2 23 476 497 475 497 0.96
10 35 0.0032 0.31 12.1 1.2 1 23 500 522 500 522 0.97
11 35 1.6e-05 0.0016 19.3 3.9 1 23 527 549 527 549 0.99
12 35 8.3e-07 8e-05 23.3 0.2 1 23 553 575 553 575 0.98
13 35 1.1e-05 0.0011 19.7 2.2 1 23 579 601 579 601 0.99
14 35 1e-05 0.00098 19.9 1.6 1 23 605 628 605 628 0.98
15 35 8.4e-05 0.0081 17.0 3.3 1 23 633 655 633 655 0.98
16 35 0.0038 0.36 11.8 2.7 1 23 659 681 659 681 0.99
17 35 1.9e-06 0.00018 22.2 3.4 1 23 688 710 688 710 0.98
18 35 0.014 1.3 10.0 1.9 1 23 714 737 714 737 0.97
19 35 8e-05 0.0077 17.1 5.4 1 23 766 788 766 788 0.97
20 35 0.0018 0.17 12.9 5.1 1 23 792 815 792 815 0.97
21 35 0.00064 0.062 14.2 2.0 1 23 821 843 821 843 0.96
22 35 0.003 0.29 12.2 1.9 5 23 850 868 849 868 0.97
23 35 4.6e-05 0.0044 17.9 2.5 2 23 874 895 873 895 0.97
24 35 8.8e-05 0.0085 17.0 2.5 1 23 901 924 901 924 0.95
25 35 0.00016 0.015 16.2 0.8 2 23 933 954 932 954 0.93
26 35 0.025 2.4 9.2 4.7 1 23 958 980 958 980 0.95
27 35 1.6e-07 1.5e-05 25.6 2.8 2 23 987 1008 986 1008 0.97
28 35 1.5e-06 0.00015 22.5 1.3 2 23 1023 1044 1022 1044 0.96
29 35 0.00028 0.027 15.4 1.0 1 21 1050 1070 1050 1073 0.90
30 35 0.0099 0.95 10.5 1.4 1 22 1079 1100 1079 1100 0.95
31 35 0.059 5.7 8.1 2.7 1 23 1107 1129 1107 1129 0.97
32 35 0.0001 0.0099 16.8 0.6 1 23 1135 1157 1135 1157 0.98
33 35 0.11 10 7.3 1.1 2 23 1164 1185 1163 1185 0.95
34 35 0.0091 0.88 10.6 6.0 1 23 1189 1212 1189 1212 0.97
35 35 7.1e-06 0.00068 20.4 0.6 1 23 1218 1240 1218 1240 0.98

Sequence Information

Coding Sequence
ATGGATACCGAAGATGATTTCGAGTATCAAAACCATACCATGGATCCGATAGATACCGAAGATGTTTCTAATTACCAAAATGACCACTATAATGTTAAGATGGAACGCGAATCAAATATTTCTACCGATGAGCATGATATTTCAGCTGCCgataaattacagaatttcttcaaaaacgaagGAATACGATTACCTCGTGGAACAGAAATCCTCATAGCGCCTGTAACCTCATCTGGCAGCTCGTACGATAACCAAATAAGCGATTCGAACTCGAATACCGGTTCGCCAGCGCCATACTCGCCATATGCGGCCGATTTAGAAGGCGATACTGGACATCCGGTacgaaaactggaaaaaaaccACCCCTGTACGTTATGCGATAAGGCCTTCAGTACGAAACGGTTTCTCGAAACGCATCTTCGTCTCCATACCCTAGAATCACTTCCGGAACACCAGCTGAGCTTGGAACGCGAGCTCGACCTGCATCGCCAAGTGTTACCAACGATTGATACCTCATCGGGGGGCATTTTTGCCTGTCCCGTTTGCGACAAAACCTTCAACATGAAACGTTACCTATCGAATCATCTTCGTAGTCATAACATGAAGTTGGTCGAATCGGATCCAAACTTCAACGGCGAGTCGTATACTTGCAAACAGTGCCAAAAATCTTATACTAAAAAAGCCTCGTTTATAGCTCACATGAAGGCTCACGATGATCGACCTTTTAAATGCGAAATCTGCAGCAGGCTGTTTCGCGAAGTTAACTCGCTCAACGTGCATCGTTCTTTACATTCCTCGAATACCAAACACCAGTGTACCGTTTGCGGCCTGTATTTCAAGTTCCGATCTCAGCTCAAGATACACGAATGGACCCACAGTAATAATAAATTCACTTGTAAATTCTGCGGCAAAAtatttcgtaattatttctccTGCAAGAGTCACGAAAATCATCATGTTAACGGTAAACAGTTCATATGTTCCTTTTGCGAGAAAACTTTCAACTCCTTTAAATTACAAAACCACAAAAAGAACCATTTATTCGAGAAATTCCAATTGGATATTAACGAAAGCGATGTCGATCCGTTGGCCATGAATGGTGCTCCTGCTGGCTTCGTTAAAATCGAACCAGGCGATGACGACGGATACTCGAATTGTAATTCTCAACTCGAACAACCCGAACAGATCAATTATTACGACGATGGTGCTAAATCAGAAACAGTCGTCGACGATTGTCTCGTCAAAAATCTCCAGTTGCATTTTCTGGAAGGTGGCAGCGAACAGAATGACGAGCCGAGAGGCGCCGAAGATTCCGGTGATCCAGATGACATCCCGCTGTACTCCTGTCAATATTGTAAAATCGATTTCAAGCAGTTGGAAGAGTTCCAAGGTCATATGGCTTCTCACGAAGGCAAGCACGATTTGAATTGTAAACACTGCGGACAAATATTCAAACGGTTCAAGAAACTGGAGAAGCATCTACGAAAACACAACGAGTACAAATGCGAAAGATGCATCAAGAGTTTCGAAACCGAATCCGAACTTTTCCAACATACGATTTACCATAAAGACGAATCTTTCAAATGTAACTATTGCGATAGCATGTTCACCAATAAATACACGTTGCAGTATCACATCAAACGCCATCTGAAACGATACCGCTGCAAGTACTGTCCGAAAAGCTTCGATAACGAGGGTCAGCTCGAGGCTCACATCGCCAGCCATCAATCCGTATACAAATGCAACTTCTGCGATaaagatttcaaattcaattcgctGCTTCTGAATCATCTCAAGATACACACCAGACAATACAAATGCGACAGATGCGATCGATCGTTCGATAAATCTATTACGTTGACCAGACACCAGAGAAACGCCCATGCGCCTTCTCCGTTCATTTGCCACGTCTGCGAACGCTCTTTCAACTACGAATCGACCTTTAATTCCCATCTAAGAAGCCACAATCGTCAATACCAATGCGTCTATTGTCTTCGCAGCTTCGACGACGAACCTTGCTATAACAAGCACGTTCGCAGACACGAGATGAAGTTTACCGAATTCAAATGCGAAAAAtgcgacaaaaaattcaaatattactCCCAGCTGCAGGTTCATATTAAAAATCACGGAAACGTGTATCGCTGCGACGAATGCAATATCGAGCTGAAACACTGGAAAAGCTACGATAAACACAAACGTCTCATTCATGGCACCGAGACACCGTCTACTTCAACCGAAACCCCCTCCGAAGGAGCCTCGACCACCGTCACCCCTGCTCCGGCCAGTAACGCTCATAAATGTCCGAAATGTGGCAAACAATTCAAATACCATTCGCAACTGTTGCTGCATGTGAAAAACCACAAAAACGTCCATCGTTGCGATCGCTGCGACCAGCAATTCAAAAACTATCGAACTTACCAGAAACACGTACGAACCGAACACGAACAAAGCCAGGAGTTCGCCTGCACCTTATGCGAGGCTAAATTCAAGTACCAAAGTCAGCTCAAACACCACGCCGAATCGCATAACCGTAAATACGCCTGCGAATGCGGCAAAACCTTCAATTCGAAGAAATATTTCGTCAGCCATCGTCTCACCCATACCGTCGATTCGCTCAAATGCGACTTCTGCGATAAACAGTTCAAATATTACTCGACGCTGAAGATCCATTTGAAATCGCACCAGAAAGACAGCACATTCCAGTGCTTCCATTGCGACCGAGTCTTCAAAACAAAGTGGAAAATTCAACGCCACATCGAGAACGCTCATCTGCGCGAGAATAAAGCTCCTCTGGTGTGCCAGACTTGCAACAAAACCTTCAAATACCTGTCGCAGCTGAAACTACACGCAGCCCAGCATGAGAAGACGTACTCGTGCAAACTCTGCGATCGTTCCTTCAACAACAAACGTTATTTCATCTTCCATAAAAATAAACACGCCGCCGGATCATCTTTGACTTGCCCTCATTGcggaaaaaccttcaaatacAATTCCCAGCTCCGTATTCATTTGAAATCGCACGTCAATGGTAAAAATTCAGCCATTCGTACCCAATGCTCGTGGAATTGCAATCTGTGCGGAAAACGGTTTAAATTCCGGTCGCTGCTCAAGAACCATATGATGATTCACGAAGGCGTCAAACCCTACCAATGCACCTACTGCGGTAAACGATTCGCCTGGAAGAGCAGCCTCCAAATACACTCGTCGTTCGTACACAAACACAAAACACGTTTCTACTGCGAATCCTGCGACCGATACTTTTTCTACGAAAGCCAATACAAACAGCATATGGCTACTTGCCAATGGGATGTCTCGTTCAACTGCAAATACTGCGCCAAACAACTGAAATCTCGTAAAACCTACGAACTCCATTTACTCAAACACGAAGGCACCAAGCAGTTTATCTGCGCTTATTGCGAAAAAGCCTTCTATACGAAGCAAGTACTCCTCAACCATATAAAAACTCATCTCGAAAGAGAAACGAAATCGTGCCCGGTATGCAATCAACAATTCACCAGCGACTTCCGTTACAACAGTCACGTCCAAAATCATTACGACGAGTTTCGTTGCGACATCTGCGATAAAGTTTTCAAATGCAAGTATAAAATGAAAAGACACTTTTTGACCACGCATCAGCCGCATTCTACGTATTCGTGTCACCTTTGCGGAAAATTATTTATACGCGAAAGTGCCCTTATTAATCATCAAGCTACGCATTTCGGACCGGCGGCCAGTTCGACCGGGGAGTTTAAACAAGAGACGTATGAGCAGCTCGATGCGTACGACGGAGATGAACGTTTACCGGAGAAATATCTCCCTAATGTAGAACAGATCGATTGTAAGCCGGATATCGACGAATTGGAGATTCTAGTTCCAGAAGTGATTTacgaaaaccatttttaa
Protein Sequence
MDTEDDFEYQNHTMDPIDTEDVSNYQNDHYNVKMERESNISTDEHDISAADKLQNFFKNEGIRLPRGTEILIAPVTSSGSSYDNQISDSNSNTGSPAPYSPYAADLEGDTGHPVRKLEKNHPCTLCDKAFSTKRFLETHLRLHTLESLPEHQLSLERELDLHRQVLPTIDTSSGGIFACPVCDKTFNMKRYLSNHLRSHNMKLVESDPNFNGESYTCKQCQKSYTKKASFIAHMKAHDDRPFKCEICSRLFREVNSLNVHRSLHSSNTKHQCTVCGLYFKFRSQLKIHEWTHSNNKFTCKFCGKIFRNYFSCKSHENHHVNGKQFICSFCEKTFNSFKLQNHKKNHLFEKFQLDINESDVDPLAMNGAPAGFVKIEPGDDDGYSNCNSQLEQPEQINYYDDGAKSETVVDDCLVKNLQLHFLEGGSEQNDEPRGAEDSGDPDDIPLYSCQYCKIDFKQLEEFQGHMASHEGKHDLNCKHCGQIFKRFKKLEKHLRKHNEYKCERCIKSFETESELFQHTIYHKDESFKCNYCDSMFTNKYTLQYHIKRHLKRYRCKYCPKSFDNEGQLEAHIASHQSVYKCNFCDKDFKFNSLLLNHLKIHTRQYKCDRCDRSFDKSITLTRHQRNAHAPSPFICHVCERSFNYESTFNSHLRSHNRQYQCVYCLRSFDDEPCYNKHVRRHEMKFTEFKCEKCDKKFKYYSQLQVHIKNHGNVYRCDECNIELKHWKSYDKHKRLIHGTETPSTSTETPSEGASTTVTPAPASNAHKCPKCGKQFKYHSQLLLHVKNHKNVHRCDRCDQQFKNYRTYQKHVRTEHEQSQEFACTLCEAKFKYQSQLKHHAESHNRKYACECGKTFNSKKYFVSHRLTHTVDSLKCDFCDKQFKYYSTLKIHLKSHQKDSTFQCFHCDRVFKTKWKIQRHIENAHLRENKAPLVCQTCNKTFKYLSQLKLHAAQHEKTYSCKLCDRSFNNKRYFIFHKNKHAAGSSLTCPHCGKTFKYNSQLRIHLKSHVNGKNSAIRTQCSWNCNLCGKRFKFRSLLKNHMMIHEGVKPYQCTYCGKRFAWKSSLQIHSSFVHKHKTRFYCESCDRYFFYESQYKQHMATCQWDVSFNCKYCAKQLKSRKTYELHLLKHEGTKQFICAYCEKAFYTKQVLLNHIKTHLERETKSCPVCNQQFTSDFRYNSHVQNHYDEFRCDICDKVFKCKYKMKRHFLTTHQPHSTYSCHLCGKLFIRESALINHQATHFGPAASSTGEFKQETYEQLDAYDGDERLPEKYLPNVEQIDCKPDIDELEILVPEVIYENHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01262766;
90% Identity
-
80% Identity
-