Pvib007697.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus viburni
Gene Symbol
Rfx2
Assembly
GCA_033439095.1
Location
JAVBJF010000083.1:1053179-1065598[-]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-35 1.8e-31 109.0 0.2 5 78 291 364 289 365 0.98

Sequence Information

Coding Sequence
ATGGCAACAACCGGACAGCTGCTAACTACCGGTGGCACCGCAACCATAACCGTCGTAGCAAATGCATCCGGTCAGACGTTATTAGTTCAACCAACAACCATAGTGAATACATCTCCAGCAAAGCATACCATATTGAAACAAACCACCGATCGATCGTCGCCAAAATTAGACACGGAAGTAGAAATTTCAGAATCGAATGAAGATCGGGTTATCGAAAGAGGTGCCAGAACGATCGTTGAAAATGCACATTATATTACCGTTCCtgAAGGTACAGCAGCTGCTAGATCATATACATCATTAACTCCGGTCACTCCGTCCATAGTCCCTGAAACCGAAACTGTTGGTACAAATGGAGTTTCTCATTCTACCTACGTCCAATATGTCGACGGTACATCAGACCAAACAATTTATACAACCAATGGACAAATggCCTATCCTGTGTACACCGTTAATGATTCTGGAACCACGATGTATTCACCGTCTTCTGGCCAATATTATCAAACAAATAGCGGTAGTCCGGTGGCATATTCTCAAGTCATCAGAGTCGCGAATAATATAAACCAAGGTAATAATCAATCACAAATTATTAACAATGGGCCATATCTAATACAACAGAACGTCGATAGTGATCATACTATAATTACTACCACTGCTGCTAGAAATACACCTACTTCTgaTGTATCTTACTTGGTGAATTCAACTAGTACAAATAATGCGACCAATAACGTGATTGTGTCCGCTCCCAGTACATCGAATGAAACTGTGaccaataataataatttacaaCATAACTCAGACACGGTTAGTACCATCAATCACATTCCTAGTGTGTCCCCAGTCATGCTGAGTAGCTGTGAAGACGGGCCTAAAGTACAATGGCTTTTAGATAATTATGAAACAGCCGATGGAGTATCGTTGCCTCGCTCAACCTTATATTATTATTACATGCATCACTGCAACGAGAGTAAAATAGATCCTGTGAATGCTGCGtcgtttggaaaattaatcAGATCTGTGTTTATTGGATTGCGAACGAGACGTTTAGGAACCCGaggTAATTCCAAATACCATTACTACGGCATACGTTTGAAAACGGACTCCCCTCTGAACAATCTATCGGTAAACGAAGAAAATGGCACATATACAACTCGAACTACAAATGGTACCACGTGCCAAACACAAAAACGTTTCAGATCCAGTAAACCGGAAACAAACGATACTCAATACACTCCCGAACAAAATCATTCCACTTCTTCGTATCAATCAGTGTCATCTCCCGAGtctcagcataatcaatttttgggagATGGAGCCTCAGCAATTCCTGATTTTCCGGAGATTACTTTCAATAACGGAACGTTACCGGAAGATTGTTCGTTGGACGATGTCGATACATTTTGTAGTATCTATCGAGAACATTGCGAAATGTTTTTGCACGCGATTGAGAATTTGGAGTTTTCCACCATTGAATCGTTGTGGAGGGAATTTTGGCGTTGCCAGGATAGTCTCGATGATTGTGAAGAAGAAAGATATCTATCGAAaacGAAACTGTATCAATTCTCGAAATGTCCCGAAGTTCAAGATTTTGTTCGTTACGTCGACTAccgtttttatcaaaatctagTCACTGTTCTAGTCCCCGATGTGTTACGATCGATTCCAAGTTCCTTAACCCAGGCCATTCGTAATTTTGCCAAAAGTTTAGAAACCTGGTTATCATCAGCGATGATCGATTGTCCTCGTGAAATGACAGTCATCAAATCAAACACAGTCAGCGCATTTTCGCAAACACTTCGACGTTACACGTCTCTGAATCATTTAGCCCAAGCAGCTCGAGCTGTTTTACAAAATTCCGCCCAAATTAATCAAATGTTGACCGATTTAAATCGCGTTGATTTTCATAACGTTCAAGAACagGCATCCTGGGTCTCCCAATGTGATACTAATTTGGTACGAAGATTAGAGGAAGATTTCAAGATAACATTGCAGCAACAAAATTCCCTGGAGGAATGGGCCAATTGGTTGAAAGGCGTAGTCGACGAAGTTCTGAAACCTTACGTTGGTAAAAAATCCTACATCAAAGCGGCCCGtcagtttttattaaaatggtCCTTTTATAGTTCTATGGTCATTCGTGATTTAACTTTGAGAAGTGCCTCTAGTTTCGGATCCTTTCATTTGATACGATTGTTGTACGATGAATATATGTTCTACGTGATCGAACATCTGGTCGCCAAAGCCACCGGCGAGACTCCTATGGCGGTCATGGGAGAGaaatatttAACAGCCACCACAGAATACGTCAACTTCGAAGTTCTAAACGATACTTCAGACCGTAGCAATGGTTCGATCACCATCGAAACGCTGGATACCGATTCGTCCAATCTGTTACTCGCCTCGAACGATATTATGGACATAGGATCTCCCAAAAGGATGAAATTATAG
Protein Sequence
MATTGQLLTTGGTATITVVANASGQTLLVQPTTIVNTSPAKHTILKQTTDRSSPKLDTEVEISESNEDRVIERGARTIVENAHYITVPEGTAAARSYTSLTPVTPSIVPETETVGTNGVSHSTYVQYVDGTSDQTIYTTNGQMAYPVYTVNDSGTTMYSPSSGQYYQTNSGSPVAYSQVIRVANNINQGNNQSQIINNGPYLIQQNVDSDHTIITTTAARNTPTSDVSYLVNSTSTNNATNNVIVSAPSTSNETVTNNNNLQHNSDTVSTINHIPSVSPVMLSSCEDGPKVQWLLDNYETADGVSLPRSTLYYYYMHHCNESKIDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRLKTDSPLNNLSVNEENGTYTTRTTNGTTCQTQKRFRSSKPETNDTQYTPEQNHSTSSYQSVSSPESQHNQFLGDGASAIPDFPEITFNNGTLPEDCSLDDVDTFCSIYREHCEMFLHAIENLEFSTIESLWREFWRCQDSLDDCEEERYLSKTKLYQFSKCPEVQDFVRYVDYRFYQNLVTVLVPDVLRSIPSSLTQAIRNFAKSLETWLSSAMIDCPREMTVIKSNTVSAFSQTLRRYTSLNHLAQAARAVLQNSAQINQMLTDLNRVDFHNVQEQASWVSQCDTNLVRRLEEDFKITLQQQNSLEEWANWLKGVVDEVLKPYVGKKSYIKAARQFLLKWSFYSSMVIRDLTLRSASSFGSFHLIRLLYDEYMFYVIEHLVAKATGETPMAVMGEKYLTATTEYVNFEVLNDTSDRSNGSITIETLDTDSSNLLLASNDIMDIGSPKRMKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00170410;
90% Identity
iTF_01263086; iTF_00725239; iTF_00194043; iTF_01150090; iTF_01472221; iTF_01490718;
80% Identity
-