Basic Information

Insect: Pseudococcus longispinus
Gene Symbol: -
Assembly: GCA_900064475.1
Location: FIZU01021393.1:6625-8930[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0002 0.93 10.0 0.1 21 54 124 162 103 162 0.75

2 5 0.13 6e+02 1.0 0.0 25 48 224 251 220 254 0.76

3 5 0.00062 2.9 8.5 0.0 21 48 363 394 360 396 0.81

4 5 0.53 2.5e+03 -0.9 0.0 25 48 476 503 471 505 0.57

5 5 0.011 51 4.5 0.0 24 48 587 615 583 617 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0002	0.93	10.0	0.1	21	54	124	162	103	162	0.75
2	5	0.13	6e+02	1.0	0.0	25	48	224	251	220	254	0.76
3	5	0.00062	2.9	8.5	0.0	21	48	363	394	360	396	0.81
4	5	0.53	2.5e+03	-0.9	0.0	25	48	476	503	471	505	0.57
5	5	0.011	51	4.5	0.0	24	48	587	615	583	617	0.71

Sequence Information

Coding Sequence: ATGTTGACTGATAACATGAACATGAATGTCGCCGAAGAAGAAGTGATTCTATGGGTCACGTCGGATCTTGTCGGAACGACTACCGTACAATCGACTTCGGAAGTAGTTGAAACCACTACAACCGTATCTGATTCTGCCATACCAGTCGCCCTAATCAGTCGAACTCAAGATGAATTAGATGATAGTCATATCACTGAAACTACCTACGAAGAGTGCAAAGGAGATTTCTGCGTTGTtgtgggtatttttttattcgttaatGATTCATTTGAAGAAAGAATCAACGTATTATCTAAATTACAGGATGTATCGCCACCCAAGgagaaaaaatccagaaaacgTGGACTGGTTTGGCAATATTTCTCGCCTACGGAACAAGAACGAGCTCAGTGTTCATTCTGCCCGGCTGTGATATCGTTTAAAGGCAAATCTACGAATAATTTATTGAGACATTTACGAACTAAGCATTCGGATACTCCTACCGTCAAGCAAGAAAGAATCGAAAACTTTCAATCTGAAGATGGCTCAACGTATTATATTCTTTCAACTCCTGATCAACTTCAGCTTACTTCGAATGATGACAGTTTTCAGACCGAAGAAGGCGAAGACAAGAATAACAAACGTCGCGGCGGCGTTTGGAAATACTTCATACTCGGTACAAATTCCAGAgcgaaatgtaaattttgtgGAACCGTTATCTCATTCAAAGGCGGCTCCACTACGAACTTACTTCGTCACATGAAATCCAAACATACCAATATCAAAGTACCGAATAAAGTAATGAGATCAGATGACTCGTTCATACTTCCAGCTACGAAACATTTCTCAATCCAACATTCGTTCGCTGAAATAGTCAACGAATGTGTAAAAAGCGACGACGAAAATGACTTCACCGTTCATACGGTTTACGACGGCCATGGCGACGATATGGATCCAATTAGTACCGAAAGTATTACCACGTTGGCTTCGATGGATCCTCATTATTCTCACGAAATCGATGTACAAGTTTGCATGCCCGAAGATCTTCAAGAAACGACCAAAGAACGTCGTAAATCAGCCGTAGcttggaaatatttcgaaatggaGAACGAAGAACGGGCCAAATGCGGGGTATGTTCGGCGGTCATCTCTTTCAAAGGTGGCTCGACTGGAAACCTTTTACGTCACTTGAAAACCAAACATTCCGAACTCGATTTAACGCCTCcggagaaaaaagaagaatacgAAGAACCTGTGCCGGAAATCAAAGAAGAAACTTTCGACGATATTGAGAATCAAGAACTGGCTAAATTCGTTCATCTGCTTAATCCAAAGTATAAATTGACCGGAGCTTTGATACCGAAATTGAACGAGaAAGAAATGCCGAAACGTATTCGTAAAAGAGGCGCTGCCCTTAGCTATTTTACAATTAACGATAACGAATCTGGTACTTGCCAATTGTGTTCTGCTGACGTTTTACTTAAAAATGGTTCCAAGGCTCCTTTATTAAGGCACTTGAAAGCCAAACATCCGGATATTGATACTGTTCTAATATCTGGTGGAAATCAATCAACGTTATCTGATGAACAATCGATACAAGATATTCAGACTGAAGATATCCAGAGTAGTATTCAAGCTAGTCtgaatatcgaaaatattgaaaatattcctatgCAAGTTACCGGCTCATCTGATGATGCTCAACCTAGAGAAAAAATAACTAGAAAAATGCGTAAAAGAGGTTTGGTCTGGAATCATTTCGCACCACTCGAGGATGAAAAAGCGAAATGCATTACGTGTCCGGCGGTTATATCATATAAACGTGGTTCGACTTCCAATCTTTTGAGACATATGAAGAAAAAGCATCCTGAAATAGACGTCAAAGATGAAGATCCTTTGAAAGAAGAAGAAGTCGTTGAACCTGCTGCAAATGAAGATGAAGAAGAAATGACTGAATACGAAGCTGTAAGTATCTGA
Protein Sequence: MLTDNMNMNVAEEEVILWVTSDLVGTTTVQSTSEVVETTTTVSDSAIPVALISRTQDELDDSHITETTYEECKGDFCVVVGIFLFVNDSFEERINVLSKLQDVSPPKEKKSRKRGLVWQYFSPTEQERAQCSFCPAVISFKGKSTNNLLRHLRTKHSDTPTVKQERIENFQSEDGSTYYILSTPDQLQLTSNDDSFQTEEGEDKNNKRRGGVWKYFILGTNSRAKCKFCGTVISFKGGSTTNLLRHMKSKHTNIKVPNKVMRSDDSFILPATKHFSIQHSFAEIVNECVKSDDENDFTVHTVYDGHGDDMDPISTESITTLASMDPHYSHEIDVQVCMPEDLQETTKERRKSAVAWKYFEMENEERAKCGVCSAVISFKGGSTGNLLRHLKTKHSELDLTPPEKKEEYEEPVPEIKEETFDDIENQELAKFVHLLNPKYKLTGALIPKLNEKEMPKRIRKRGAALSYFTINDNESGTCQLCSADVLLKNGSKAPLLRHLKAKHPDIDTVLISGGNQSTLSDEQSIQDIQTEDIQSSIQASLNIENIENIPMQVTGSSDDAQPREKITRKMRKRGLVWNHFAPLEDEKAKCITCPAVISYKRGSTSNLLRHMKKKHPEIDVKDEDPLKEEEVVEPAANEDEEEMTEYEAVSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262750;
90% Identity: iTF_01262750;
80% Identity: iTF_01262750;