Basic Information

Insect: Pseudococcus longispinus
Gene Symbol: -
Assembly: GCA_900064475.1
Location: FIZU01053076.1:9574-13298[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.59 57 4.9 0.1 2 23 8 29 7 29 0.94

2 15 0.014 1.3 10.0 0.8 1 23 669 692 669 692 0.92

3 15 0.016 1.5 9.8 0.5 2 23 738 760 737 760 0.95

4 15 0.35 33 5.6 2.5 2 23 768 790 767 790 0.95

5 15 0.0019 0.19 12.7 3.2 1 23 792 814 792 814 0.98

6 15 2.4e-05 0.0023 18.7 0.2 3 23 822 842 820 842 0.97

7 15 0.00016 0.015 16.1 1.5 2 23 849 871 848 871 0.95

8 15 0.024 2.2 9.3 0.7 5 23 884 902 883 902 0.96

9 15 0.00062 0.059 14.2 1.4 2 23 908 930 907 930 0.97

10 15 0.014 1.3 10.0 0.5 2 23 948 968 947 968 0.97

11 15 5.2e-05 0.0049 17.6 1.3 1 20 974 993 974 996 0.92

12 15 0.00088 0.084 13.8 2.1 1 23 1004 1026 1004 1026 0.99

13 15 4.1e-05 0.0039 18.0 3.3 1 23 1032 1054 1032 1054 0.98

14 15 3e-06 0.00028 21.5 6.1 1 23 1060 1082 1060 1082 0.99

15 15 0.0065 0.62 11.0 6.9 1 23 1088 1110 1088 1110 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.59	57	4.9	0.1	2	23	8	29	7	29	0.94
2	15	0.014	1.3	10.0	0.8	1	23	669	692	669	692	0.92
3	15	0.016	1.5	9.8	0.5	2	23	738	760	737	760	0.95
4	15	0.35	33	5.6	2.5	2	23	768	790	767	790	0.95
5	15	0.0019	0.19	12.7	3.2	1	23	792	814	792	814	0.98
6	15	2.4e-05	0.0023	18.7	0.2	3	23	822	842	820	842	0.97
7	15	0.00016	0.015	16.1	1.5	2	23	849	871	848	871	0.95
8	15	0.024	2.2	9.3	0.7	5	23	884	902	883	902	0.96
9	15	0.00062	0.059	14.2	1.4	2	23	908	930	907	930	0.97
10	15	0.014	1.3	10.0	0.5	2	23	948	968	947	968	0.97
11	15	5.2e-05	0.0049	17.6	1.3	1	20	974	993	974	996	0.92
12	15	0.00088	0.084	13.8	2.1	1	23	1004	1026	1004	1026	0.99
13	15	4.1e-05	0.0039	18.0	3.3	1	23	1032	1054	1032	1054	0.98
14	15	3e-06	0.00028	21.5	6.1	1	23	1060	1082	1060	1082	0.99
15	15	0.0065	0.62	11.0	6.9	1	23	1088	1110	1088	1110	0.98

Sequence Information

Coding Sequence: ATGGAGCCTCAAAGTAGCATAGTGTGTCCTGTATGTTCGTTATATCTTCGAGAAGGTATCTCTTTGAAGAGTCACTTGCAAACTCACTCGAAAGATAAAGTTATCGATGCTCTGCTAAATAAACAAATTAGTTCGGATGGTGCTACGTCTTCGGAAACGGACGCATTAGCGTCAATTATCCGGGACTCGTCGTCGATTTCTTTGTCATCGGAGAATCGCGTTACGTCTTATAGTCATAGCACACTATCAATTTTACCCACTCCATCCTATGTACAACCTGCCAGCCAATCGCCAACTGGATTAAACTGCAATCCGACTGTTTCTCCCGGTATGCAATACATGCCAACGTTGGGTAATAACGTAATTGCAACGCAGACAATGGTTGGCAACTCGTGTCAGTCGAATTTCACGTACCAACAATTCGTTACCAACGATGGTAACATTGTTTTAATTCCAATGTACACGCCACAACCGTCGATGATGGTATCCAACAATCTGCTTTCGCCTCCGGTGATCAACTCTTGTATTGTGGTTCCTCCAGCTGCCAACAGTGTCGGATCGGTTACCGTAGTAGATTCTGGCGTATCTCACGACTCGCCTAAATTGACCCCGTCTCCGCAATGCGTCACTTTGGTGGAAAATTGTACAGTCAGCGCGCACGAAGAGGCGACTACTTTGCACGAATGCAGTACGAGCCCTTCACTGGTGACCGATGCTGACAGGAATCCTATGGACGACGATTACGAGAAAGAGAATGATGCCGAGGTTGCtaatatatttcaaatgcCAGTTGATTCCGTAGTACAAGAGGTAGATAACGAGGAAGCTGAGCGGTCGACCGCTAATCTGGTAGTAGATGTGGATATGGATGATAAATCAAGCTGCCAATCGTTCGATAATGCCGATGAAGATCGTAATAATTATTCCTTAGTCGGTTCGCCGTTTTCCAGTCACGATTACGAAAACGATTCCGAACCATCTAAATCGCCAATATCTCCGGATGTCTCtattataaaattgcaaaCTGAATTGAATTACGAAAGCGACAATTCCGACTACACACCAGAGCCTGAAGTCGATGATTCGGGCTCGATCGACGATATCCTTAAATCGGACGACGGTGAATCCGATAAATTCGAACACAGTTACGGTAAAAGTTCCAAATCACCGATACCTATTATGGACAATAAAACGTACACTTCTCCCATTCACAGTCCTGCCCCAATGGAGAATTCCCAGCGTAACGGACAATTCGATTTTATCGTTTCAAACTCAGACAATGCGACGCATATCTTACCCGATCGACTCGATGACTCGGGCTCGTCGACGtcgaaaaattgcgaaaaagaGCATTACATTTTGCCAAATAACGAAATCCCTAGGACGTCTCCGGTCAACACAGATTATAGTTTTATCGGCTTGCGAAGTAGTTTTTCTACCTCCGCTTCTCTCATTTCGTCCGTCAATAAGACCATGTTTGCTGACGTAGACGTTTACgcggtcgaaaaaaatgaaccgaatttactcgaaaaatgCGAAAACGATAATGCGATGAATTTAATGAAAGACGATTTCTACACGTCGCAACAGCGGCAAGCTCGTTATGCTAAAATGAGCTCCACCACGGAGGAGAAAATCAGAGAGAATTATAAAGGTATCAACGAACTGTTGTTGGATTCGGCCGGTAGTTCTCGTGTCAGTCCTTTCGATATTCAAACCGATGAAAGTATGCCAGCTCGAGGTGAATTATCAGGGCAAGAAAGTCTCAGCGGtactgaaaattcaatttgggAATTGCAGGTGCAGCAAGATACTTACGTTCAACCGTGTAATATTTCGTGCAAGAAAGAAAATACCGACGTGAAAATCGGATTGCAATCTTTGATGACTGAAATTAATATCAAAATGGATGCGGATACGTTCAGAAACGTTGAATGTGATTCCGTCGAAGAAGATAGTAAATTGGCCGTTCAAAACTTATTCAAaaaaaaactttctcgCGAATTCCGATGTTTCTACTGCAAGGAGAACTTCGATAGTTGGAAATCGCGTCAGCTACATATCGCCGACATTCACGTCGAAGAAGACGGTCTCACTATCGAATCATTGTTcgggaaaaaagtaaaattcgaACGCGAAGGAGAACCAAAAGTCGAAGTCGTTCAAGGCGAAAACGACTCGACCGATTTGACCGCTTGCACCGAAAACATAATGTGTCGCATTTGCagccaaaatttcgaaaccagTACGTCGTTTTTGGAGCATTTGAAATACGTGCACAGCATCAAGAAACGCAATTGTGTGTGTCCCACTTGTTTGGTACATTTTTCGAACGTCGAGGAATACCACGAACATATCCTGAAAGTGCATCCGTACGAGTGCATGACttgtggtaaaaaattccacaccAGACCCGGCTACATGCTGCATCAAAAACGTCACATGAAAGTCAAACCGTACGGTTGCGACGTATGTGACAAATCGTTCGTAACCAAGCAAAAACTCAGCGAGCATATCAATGTACACACCGGCGACAATCCGATCAAATGCGACATGTGCAACGCCGTCTTCAAAAGGTATTCGAATTACCAGCAGCACAAGAAATACTTGCATATGAATACGAAAAGGAAACTGAAAGATTTTATATGCGATTGCGGCGAAGTATTCCATAGTAAAACCAAGTTAATTTGGCATCGCGAAATACACGACGAGAAACCGAAACAGTGCCCTTTTTGCGTCGAACGTTTTGTGCATACGGCTAGCCTAACGCGTCACGTGCGTAAATGGCATAACGAAACCTACCTGTCAGAGCTCGTcgacaaaaagaaaatcaaaaacgtTGTCTGCCCGGTTTGCAACATCACGTATCTGCATACGTCGCTGCAAACCCACATGAAAATACACGAAGGCATTAAACCGTTCTCGTGCGGCGAATGCTCCAAAACCTTTCGAACCAAATGGAATTTGCAATTGCATCGATGGACTCATATGTCTAGATCGTCTAAACCGTACAAATGTAAACTGTGTGTCAAAGCGTATATCCACAAGACAGACTACGACGCTCATCTTAGATCGCATAGTAATTGCAGACCGTACTCGTGTAACGTCTGCGGACGTCAGTTTATCAGGAAGTATAATTGTATTCGCCATATGCGAGAGCACAAGGAACCCAGATCGTATAAGTGCAATATTTGTAAGAAAATGTTCTCGAGGAGTTATTACCTTACGGAACATCACAAAACGCATACCGGCGAAAAGCCTCATACGTGCCACGTGTGCGGCAAAACCTCCGCTACAAAATCCAATCATAATAAGCACGTCAAAATGCATAACAATATCAGGGAATCGGTCAATTCCGAAGGTTAA
Protein Sequence: MEPQSSIVCPVCSLYLREGISLKSHLQTHSKDKVIDALLNKQISSDGATSSETDALASIIRDSSSISLSSENRVTSYSHSTLSILPTPSYVQPASQSPTGLNCNPTVSPGMQYMPTLGNNVIATQTMVGNSCQSNFTYQQFVTNDGNIVLIPMYTPQPSMMVSNNLLSPPVINSCIVVPPAANSVGSVTVVDSGVSHDSPKLTPSPQCVTLVENCTVSAHEEATTLHECSTSPSLVTDADRNPMDDDYEKENDAEVANIFQMPVDSVVQEVDNEEAERSTANLVVDVDMDDKSSCQSFDNADEDRNNYSLVGSPFSSHDYENDSEPSKSPISPDVSIIKLQTELNYESDNSDYTPEPEVDDSGSIDDILKSDDGESDKFEHSYGKSSKSPIPIMDNKTYTSPIHSPAPMENSQRNGQFDFIVSNSDNATHILPDRLDDSGSSTSKNCEKEHYILPNNEIPRTSPVNTDYSFIGLRSSFSTSASLISSVNKTMFADVDVYAVEKNEPNLLEKCENDNAMNLMKDDFYTSQQRQARYAKMSSTTEEKIRENYKGINELLLDSAGSSRVSPFDIQTDESMPARGELSGQESLSGTENSIWELQVQQDTYVQPCNISCKKENTDVKIGLQSLMTEINIKMDADTFRNVECDSVEEDSKLAVQNLFKKKLSREFRCFYCKENFDSWKSRQLHIADIHVEEDGLTIESLFGKKVKFEREGEPKVEVVQGENDSTDLTACTENIMCRICSQNFETSTSFLEHLKYVHSIKKRNCVCPTCLVHFSNVEEYHEHILKVHPYECMTCGKKFHTRPGYMLHQKRHMKVKPYGCDVCDKSFVTKQKLSEHINVHTGDNPIKCDMCNAVFKRYSNYQQHKKYLHMNTKRKLKDFICDCGEVFHSKTKLIWHREIHDEKPKQCPFCVERFVHTASLTRHVRKWHNETYLSELVDKKKIKNVVCPVCNITYLHTSLQTHMKIHEGIKPFSCGECSKTFRTKWNLQLHRWTHMSRSSKPYKCKLCVKAYIHKTDYDAHLRSHSNCRPYSCNVCGRQFIRKYNCIRHMREHKEPRSYKCNICKKMFSRSYYLTEHHKTHTGEKPHTCHVCGKTSATKSNHNKHVKMHNNIRESVNSEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01263914; iTF_01472648; iTF_01150665; iTF_00194639;
90% Identity: -
80% Identity: -