Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01026784.1:6725-10278[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.69 55 4.7 0.1 2 23 8 29 7 29 0.94

2 15 0.013 1 10.1 1.4 1 23 665 688 665 688 0.91

3 15 0.11 8.5 7.3 0.3 3 23 751 772 749 772 0.94

4 15 0.095 7.5 7.5 0.8 2 23 780 802 779 802 0.95

5 15 0.0021 0.17 12.7 3.2 1 23 804 826 804 826 0.98

6 15 2.5e-05 0.002 18.7 0.2 3 23 834 854 832 854 0.97

7 15 9.8e-05 0.0078 16.8 1.2 2 23 861 883 860 883 0.95

8 15 0.046 3.6 8.4 0.9 5 23 896 914 895 914 0.96

9 15 0.00067 0.053 14.2 1.4 2 23 920 942 919 942 0.97

10 15 0.006 0.48 11.2 0.4 2 23 960 980 959 980 0.97

11 15 5.6e-05 0.0044 17.6 1.3 1 20 986 1005 986 1008 0.92

12 15 0.00095 0.076 13.7 2.1 1 23 1016 1038 1016 1038 0.99

13 15 4.4e-05 0.0035 17.9 3.3 1 23 1044 1066 1044 1066 0.98

14 15 4.5e-06 0.00036 21.0 5.6 1 23 1072 1094 1072 1094 0.99

15 15 0.0071 0.56 11.0 6.9 1 23 1100 1122 1100 1122 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.69	55	4.7	0.1	2	23	8	29	7	29	0.94
2	15	0.013	1	10.1	1.4	1	23	665	688	665	688	0.91
3	15	0.11	8.5	7.3	0.3	3	23	751	772	749	772	0.94
4	15	0.095	7.5	7.5	0.8	2	23	780	802	779	802	0.95
5	15	0.0021	0.17	12.7	3.2	1	23	804	826	804	826	0.98
6	15	2.5e-05	0.002	18.7	0.2	3	23	834	854	832	854	0.97
7	15	9.8e-05	0.0078	16.8	1.2	2	23	861	883	860	883	0.95
8	15	0.046	3.6	8.4	0.9	5	23	896	914	895	914	0.96
9	15	0.00067	0.053	14.2	1.4	2	23	920	942	919	942	0.97
10	15	0.006	0.48	11.2	0.4	2	23	960	980	959	980	0.97
11	15	5.6e-05	0.0044	17.6	1.3	1	20	986	1005	986	1008	0.92
12	15	0.00095	0.076	13.7	2.1	1	23	1016	1038	1016	1038	0.99
13	15	4.4e-05	0.0035	17.9	3.3	1	23	1044	1066	1044	1066	0.98
14	15	4.5e-06	0.00036	21.0	5.6	1	23	1072	1094	1072	1094	0.99
15	15	0.0071	0.56	11.0	6.9	1	23	1100	1122	1100	1122	0.98

Sequence Information

Coding Sequence: ATGGAACTTGAAACCAGCACTGTGTGTCCTGTTTGTTCATTGTACCTTCGAGAAGGTATCTCTTTGAAAAGTCATTTACAAACTCACTCAAAGGATAAAGTTATCGAAGCCTTGCTGAAAAAGCAGATCGCGTCGGATGATGTTACGTGTTCGGAGACGGACACTCTAACCTCGATGATCAGAGATTCGTCGTCGATTTCTTTATCATCGGAAAATCGAGTCACATCTTACAGTCACAGTACTTTATCAATCATTCCTACTCCTACCTTCGTACATGCTGCCAACCAATCTCCTCCGAGTTTAAATTGCAATCAAAATATATCATCGGGAATCCAATACATGCCACCGTTAAGTAATAACGTATTAGCTACGCAAACAGTGGTTGGAAATTCGTGTCAGTCGAACGTAACGTACCAACAGTTCCTCACCAACGATGGTAACGTCGTTTTAATTCCAATGTACGCGCCGCAACCGCCCGTAGTGGTTTCGAACAACCTGCTGAGTCCACCGGTAATCAACTCTTGTATCGTGGTACCTACGTCGGCCAATAACGTCGGTTCGGTCACGGTGGTAGATCCGGCTGTGCCTCACGAAACACCTAGGTTAACTTCATCGCCGCAGTGCGTCGCTTTGATGGCTAATTGTACGGACGATGTGGACGACAACGCGAGTTGTTCGCGCGAAGGCAGCGAGAGCCAGCCTTTGGTCGTTGATGTCGACAAGAGTTCGGCCGACgattacgaaaaagaaaacgacgCCGAAGTTGCGAATATATTTCAAATTCCCTACAATTCCGACTTACAGCGAGCCACTGCCGACGGAGCTGCGCAATCAACTACTCATAGCGTAGTGGTCGACGTAGATACGGACGATAAATCAAGTTGTCGATCTTACGATAACATCgaagaagaggaagaaaaTCAGAGCAATTATTCCGCAATTGATTCGCCGTATTTACCTCATGATTACGAAAACGACTTGGAACCGTCGAAATCTTCCTCATCTTCGGACGTTTCTGTAGTAAAATTACAAGACGAATTGCATTACGAAAGCGAAAACTCTGACTATACTGCGGAGGCAGAAGCCGACGATTCGGCGACCGACGTATTGAAATCGGACGACGGCGAGTCCGATAAATTCGAACACAGTTACGGTAAAAGTTCCAAATCATCTGTACCGATAATCGATAACAAAACGTACACTTCTCCTATTCACAGTCCGGCCCCAATGGAAAATTCCGTTCGTACCGGGCAATTCGATTTTATCGTTTCGAATTCGGACAACGCGACGCATATTTTACCCGATCGTCTCGACGAATCTGGCGCATCCACGTCTAAACATTACGAAAGGGACCATTACATTTTGCCGAATAACGAAATTCCTACTGCATCAGCGATCAACACGGACTACAGTTTCATTGGTCTTAGGAGCAGTTTTTCAACATCCGCGTCTCTGATTTCGTCCGTCAATAAAACCATGTTCGCCGACGTCGACGTTTACGCGATCGAGAGAAACGATCAGAATTCGCcggaaaaattcgacaacgaTAACGCGACCAATTTAACGAAGGGCAATTTCTACGGCTCGCAACGTCGACAAGCTCGTTACACGAAGATGAACACCACTACagaggaaaaaatcagagaaaattacaaaggTATTAACGAACTGCTGTTGGATTCGGCGGGCAGTTCTCGCGTCAGTCCTTTTGATATTCAAACCGACGAAAGTATGCCGGCTCGTGGCGAGCTATCCGGTCAAGAAAGTCTCAGCGGCACTGAAAATTCTATCTGGGAATTGCagGTAAAGCAGAAGTCTTTCGTTGAACGATGTAAAGCCAACACAGACATGAAAATCGGATTGCAGTCGTTGATGACCGAAATCAATATCAAAATGGATGCGGATACGTTCAGAAATGTCGAATGCGAGCCTCTAGAAGAAGATAGCAAATTATCAGTTCATAATATATTCAAgaaaaaattgctacGCGAATTCCGATGTTTTTATTGCAAGCAAAATTTCGATACTTGGAAATCGCGTCAATCGCACATCGGCGAAGTACACGCCGAAGAAGACGGTCTCACCATCGAGTCGCTGTTTGGTAAAAAAGTCGTATGCAAACGCGAAGAAGAAGGAGACGGGGCAGTGGCGACGGTGACGAAACAAGAAGGAGAAGCGGCAGTGGCAACGGTGACAAAAGAAGAAGGCCAAGACGACGGCGCCATAGAACTGACCGCCGAAAGTATAATATGTCGTATTTgtagcgaaaatttcgaaaacggTACGCTATTTTTGAAGCACTTGAGGTTCGTGCACGGTATCAAGAAACGTAACTGCGTATGCCCCACCTGTTTGGTGCATTTCGCCAGCGTCGAAGAATACCAAGAACACATCCAAAAGGTCCATCCTTACGAGTGCATGACTTGcggcaaaaaattccacaccAGACCGGGCTACATGCTGCATCAGAAACGTCACATGAAAGTTAAACCCTACGGCTGCGAGGTATGCGACAAGTCGTTCGTAACCAAACAAAAGCTCAGCGAACATATCAACGTGCATACGGGCGACAATCCGATCAAGTGCGATATGTGCGACGCGGTATTCAAACGTTATTCCAATTACCAGCAGCATAAAAAGTACCTGCACATGAATACGAAACGTAAACTGAAAGATTTCATATGCGATTGCGGCGAAGTATTCCACAGCAAAACCAAGCTACTTTGGCATCGCGAAATACACGACAGCAAACCGAAACAGTGTCCGTTCTGCGTCGAACGCTTCGTTCATACGGCTAGTTTGACCAGGCACGTACGTAAATGGCACAACGAAAGCTACCTCTCCGAATTGGTCGataagaagaaaatcaaaaacgtcGTCTGCCCCGTTTGCAACGTCACCTATCTGCATTCGTCGTTGCAAACGCACATGAAAATACACGAAGGTATCAAACCGTTCTCGTGCGGCGAATGCTCCAAAACGTTTCGCACAAAATGGAACTTACAGCTGCACCGATGGACGCACATGTCCAGATCGTCTAAACCGTACAAATGTAAGCTGTGCGTCAAAGCTTACATTCACAAGACCGACTACGACGCTCACCTTAGATCGCACAGCAACTGTAGACCTTATTCGTGTAACGTTTGCGGACGACAGTTTATACGTAAATATAACTGTATTCGACATATGCGAGAGCACAAGGAGAGCAAACCGTACCAGTGTAATGTTTGCAAGAAAATGTTCTCCAGAAGTTACTACCTCACCGAACACCACAAGACCCACACCGGAGAAAAGCCGCATACGTGTCACGTCTGCGGTAAAACCTCCGCAACCAAGTCCAATCACAACAAGCACGTCAAAATGCATAATAATATCAGAGAATCTGTCAATTCCGAAGGTTGA
Protein Sequence: MELETSTVCPVCSLYLREGISLKSHLQTHSKDKVIEALLKKQIASDDVTCSETDTLTSMIRDSSSISLSSENRVTSYSHSTLSIIPTPTFVHAANQSPPSLNCNQNISSGIQYMPPLSNNVLATQTVVGNSCQSNVTYQQFLTNDGNVVLIPMYAPQPPVVVSNNLLSPPVINSCIVVPTSANNVGSVTVVDPAVPHETPRLTSSPQCVALMANCTDDVDDNASCSREGSESQPLVVDVDKSSADDYEKENDAEVANIFQIPYNSDLQRATADGAAQSTTHSVVVDVDTDDKSSCRSYDNIEEEEENQSNYSAIDSPYLPHDYENDLEPSKSSSSSDVSVVKLQDELHYESENSDYTAEAEADDSATDVLKSDDGESDKFEHSYGKSSKSSVPIIDNKTYTSPIHSPAPMENSVRTGQFDFIVSNSDNATHILPDRLDESGASTSKHYERDHYILPNNEIPTASAINTDYSFIGLRSSFSTSASLISSVNKTMFADVDVYAIERNDQNSPEKFDNDNATNLTKGNFYGSQRRQARYTKMNTTTEEKIRENYKGINELLLDSAGSSRVSPFDIQTDESMPARGELSGQESLSGTENSIWELQVKQKSFVERCKANTDMKIGLQSLMTEINIKMDADTFRNVECEPLEEDSKLSVHNIFKKKLLREFRCFYCKQNFDTWKSRQSHIGEVHAEEDGLTIESLFGKKVVCKREEEGDGAVATVTKQEGEAAVATVTKEEGQDDGAIELTAESIICRICSENFENGTLFLKHLRFVHGIKKRNCVCPTCLVHFASVEEYQEHIQKVHPYECMTCGKKFHTRPGYMLHQKRHMKVKPYGCEVCDKSFVTKQKLSEHINVHTGDNPIKCDMCDAVFKRYSNYQQHKKYLHMNTKRKLKDFICDCGEVFHSKTKLLWHREIHDSKPKQCPFCVERFVHTASLTRHVRKWHNESYLSELVDKKKIKNVVCPVCNVTYLHSSLQTHMKIHEGIKPFSCGECSKTFRTKWNLQLHRWTHMSRSSKPYKCKLCVKAYIHKTDYDAHLRSHSNCRPYSCNVCGRQFIRKYNCIRHMREHKESKPYQCNVCKKMFSRSYYLTEHHKTHTGEKPHTCHVCGKTSATKSNHNKHVKMHNNIRESVNSEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262807;
90% Identity: -
80% Identity: -