Plon016044.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01017822.1:31426-33891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.9e-05 0.0018 19.0 0.5 2 23 196 218 196 218 0.98 2 19 4.9e-05 0.0047 17.7 1.5 1 23 224 246 224 246 0.97 3 19 0.053 5 8.2 1.8 3 23 254 275 252 275 0.91 4 19 0.021 2 9.4 3.9 1 23 281 303 281 303 0.98 5 19 4.6e-05 0.0044 17.8 3.2 1 23 309 331 309 331 0.98 6 19 5.7e-05 0.0054 17.5 1.1 1 23 337 359 337 359 0.95 7 19 0.0013 0.13 13.2 0.9 3 23 367 387 365 387 0.98 8 19 1.8e-05 0.0018 19.0 3.8 1 23 393 415 393 415 0.97 9 19 0.00062 0.059 14.2 3.7 3 23 423 443 421 443 0.97 10 19 2.9e-05 0.0027 18.4 0.6 3 23 451 471 449 471 0.98 11 19 1.4e-06 0.00013 22.6 2.5 1 23 477 499 477 499 0.97 12 19 2.2e-06 0.00021 22.0 3.0 1 23 505 528 505 528 0.96 13 19 2.2e-05 0.002 18.8 3.5 1 23 534 556 534 556 0.98 14 19 1.2e-05 0.0011 19.6 0.7 3 23 564 584 562 584 0.98 15 19 1.4e-05 0.0014 19.4 1.7 1 23 590 612 590 612 0.98 16 19 3.2e-06 0.0003 21.4 1.6 1 23 618 640 618 640 0.98 17 19 5.3e-06 0.00051 20.7 2.6 1 23 646 668 646 668 0.98 18 19 4.5e-06 0.00043 21.0 0.6 1 23 674 696 674 696 0.98 19 19 0.00014 0.013 16.2 2.3 1 23 702 724 702 724 0.98
Sequence Information
- Coding Sequence
- atGAAAGAAGAAGCTGAAATAGTCCCGGACGCGTACAACGATGAGGTTTACGAACCCATAGAAGGCGTTTTAGAAACATGtattaaagaagaaaattcgaatttgaaactGGATTTCAATGAGGTGCAAACAAATTCGAATAAAATAGTACCCTGTAATACGACCGGCAAAGCGTTGATCGCACTGTCTAGTTGTAAACCTTGCGAAAAGCTGATTAAAGATGATGAAGAAGTACGTACTCATTTGACGTTGCATGATTCAGATCAAAAATACAGTCAATGTAACAGAAATTTTGCTTCCAAGACTATTATGAAGGATCATAATATTGATCCAACGAACAGAAAAGAAATTCTcatttataacatttcaaaagGCGAACCTCATGAAAAATCTTACGTTGACGACGTTGAAAGAAATGagaaacttgttgaaaaatacgaatctACCGATGAAATGGAGAAcggaatttcagtttcagatcTAAAACAAAGACACTCCATCGAAACTGAACTGAATGAAAATGTTCGACAACAAAGAATCGGCgctaaaaaaagtaaacacgTCAAAGAACGTATTCGATTAGCGAAATGCAAACTATGCACGGAAAGTTTCGCCAATCGAGAATTGCTACAGAGTCACATTAACACAGTACACGCCAAACAGAAAGTatttaattgtgaaaattgcgaCAAAGATTTCGCCAGTAGtcgtttattaaaaaaacactcgagTACGCATTCGAAAGATAAGTTATACGGATGTAATTGCTGCACCGAAACGTTTTGCGATAATAATGCGTTACAAGTGCACATCTCGTTGGTGCATATAGAAGAGAAGTATTTTCCTTGTGAattttgttgtaaaaagtACGAATCGAAGAACAGCCTCAAGATGCACATGTTATCGCACGATTTGCCAAATAATTACAGTTGTTCtcagtgtaaaaaaatcttcaaaacgaagaaaaaattagaaacgcATGTTCAGAATCACTCTCAAGAAAAGCGATTTCTCTGTTCGGTTTGCGAGAAACGTTTCACGTCGCAGTCAAAATTGGATATTCATACGAAAATTCACACCGGTGAGCGACCGTTCGGTTGCGAATATTGTCCCAAACGTTTTATAACGCGTTGGAAACAGAAATTACATACGCGAATTCACACCGGAGAAAAACCATTCGCTTGTTCGACGTGTCGTAAATGTTTTATTTCGAAAGATAAATTGCAGACGCATTTGCGAGTTCACAAAGGATTAAAATTGTTCGGTTGCGAGCAGTGCACCAAGAAATTCTGTACCAAAGAACAGCTACGATTGCATACGGTAACGCATACTGGAGAAAAACCGTTCGGTTGCGAGCTTTGCGAAAAACGTTTCATTTCTCGTTCCAAGCTGCAAATACACGTTCGTATGCATACCGGCGAAAGACCCTTCGCATGCGAGACTTGCGGTCGTAGTTTCATTTCGAATCACAAATTGCAAACTCATCTGAGAACGCACAGCGGCGAAAAACCTTTCGAATGCGACCACTGTAACAAACGGTTCACTTCTAAAGAACTTTTGCAATCTCACATAAACCAAACGCATTTTGGTTTGAAGCCGTTCCACTGCGAAATGTGCGAGAAACGCTTCGTCAGTCGATATAAATTGCAATTACACATTCGCAGTCATACCGGCGAAAAACCATTCGGTTGCGAATTTTGTGAGAAATCTTTCGTCACTCGATACAAGTTACAAGTGCACCTACGTATCCATACCGGCGAACGACCATTCCCGTGTTACCTATGCGAAAGATGTTTTATATCGAATGATAAATTACAGGTACACATCAGATCTCATACAGGTGAGCGGCCTTACATGTGCGAACATTGTAATAAATCGTTCATATCCAGCGATAAACTACTAATGCATGTACGAATCCACAACGGTGATAAACGTTTCAGTTGCGAAACTTGCGAGAAAAGTTTCATAACCAGATATAAATTACAACTACATACGAGAACTCATACTGGCGAAAAACCTTTTGTGTGCACCGTTTGTACTAAAGGTTTCATTACCAACGATAAACTCAaagtacatactcgtatacatACGGGAGAAAAACCGTACATTTGTGTTTATTGTAACAAAGGTTACATTACTAATTGTAAACTACAAGTACACCTTAAAACGCACACAGATGAAACTATTCTGCGTAGTGTTCATTGGTTATTACAATAA
- Protein Sequence
- MKEEAEIVPDAYNDEVYEPIEGVLETCIKEENSNLKLDFNEVQTNSNKIVPCNTTGKALIALSSCKPCEKLIKDDEEVRTHLTLHDSDQKYSQCNRNFASKTIMKDHNIDPTNRKEILIYNISKGEPHEKSYVDDVERNEKLVEKYESTDEMENGISVSDLKQRHSIETELNENVRQQRIGAKKSKHVKERIRLAKCKLCTESFANRELLQSHINTVHAKQKVFNCENCDKDFASSRLLKKHSSTHSKDKLYGCNCCTETFCDNNALQVHISLVHIEEKYFPCEFCCKKYESKNSLKMHMLSHDLPNNYSCSQCKKIFKTKKKLETHVQNHSQEKRFLCSVCEKRFTSQSKLDIHTKIHTGERPFGCEYCPKRFITRWKQKLHTRIHTGEKPFACSTCRKCFISKDKLQTHLRVHKGLKLFGCEQCTKKFCTKEQLRLHTVTHTGEKPFGCELCEKRFISRSKLQIHVRMHTGERPFACETCGRSFISNHKLQTHLRTHSGEKPFECDHCNKRFTSKELLQSHINQTHFGLKPFHCEMCEKRFVSRYKLQLHIRSHTGEKPFGCEFCEKSFVTRYKLQVHLRIHTGERPFPCYLCERCFISNDKLQVHIRSHTGERPYMCEHCNKSFISSDKLLMHVRIHNGDKRFSCETCEKSFITRYKLQLHTRTHTGEKPFVCTVCTKGFITNDKLKVHTRIHTGEKPYICVYCNKGYITNCKLQVHLKTHTDETILRSVHWLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150631;
- 90% Identity
- -
- 80% Identity
- -