Pmar005473.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01001167.1:12814-14730[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00011 0.0087 16.7 0.4 2 23 96 118 96 118 0.98 2 19 3.7e-06 0.0003 21.3 1.3 1 23 124 146 124 146 0.98 3 19 0.0011 0.084 13.6 3.2 1 23 152 175 152 175 0.95 4 19 0.019 1.5 9.7 3.7 1 23 181 203 181 203 0.98 5 19 0.00029 0.023 15.4 2.7 1 23 209 231 209 231 0.98 6 19 3.7e-05 0.0029 18.2 1.6 1 23 237 259 237 259 0.97 7 19 0.0012 0.097 13.4 0.9 3 23 267 287 265 287 0.98 8 19 3.7e-05 0.0029 18.2 4.0 1 23 293 315 293 315 0.98 9 19 2e-06 0.00016 22.1 1.5 1 23 321 343 321 343 0.97 10 19 2.7e-05 0.0021 18.6 0.6 3 23 351 371 349 371 0.98 11 19 7.6e-06 0.0006 20.3 3.0 1 23 377 399 377 399 0.97 12 19 3.8e-06 0.0003 21.3 3.0 1 23 405 428 405 428 0.95 13 19 3.4e-05 0.0027 18.3 3.9 1 23 434 456 434 456 0.98 14 19 2.2e-06 0.00018 22.0 0.5 3 23 464 484 462 484 0.98 15 19 1.3e-05 0.001 19.6 1.7 1 23 490 512 490 512 0.98 16 19 4.7e-06 0.00037 21.0 1.0 1 23 518 540 518 540 0.98 17 19 4.8e-06 0.00038 21.0 2.6 1 23 546 568 546 568 0.98 18 19 7.1e-06 0.00057 20.4 0.5 1 23 574 596 574 596 0.98 19 19 0.00013 0.01 16.5 2.3 1 23 602 624 602 624 0.98
Sequence Information
- Coding Sequence
- ATGAAAGAGCTTATTGATACTACGCATAAAGAAGACGTTTTCATcaacaatatttcaaataatgaaACTTCGGAAAAACTCAATCTCGAGACGCTTGTACAAGACGAAAAAGCAGAAAATCCCACTGAAGTGCCGAACGGAATTACGGTTTCAACATCAGAACAAAAAACCATCGTCCATGCAGAATCAAACCTTGATGTTGATAATACTCCAGACGGAACTATTCGATCGTCGAAACtcgtcacaaaaaaaaataaacacattaAAGAACGTGTTCGTTTAGCAAAATGTAAGCTTTGCGCGGAAAGTTTCACTAGTCGAGAATCGCTGCAAGGTCACATAAACACGGTGCACGCAAAACAGAAAGAAttcaattgtgaaaattgcGATAAAGATTTCACCAGCAGTCGTCTGTTAGAAAAACACTTGAGTACGCATCAAAAGGAAAAACTTTACGAATGCCACTGTTGTGGCGAAACTTTCTGCGATAATAATGCTCTGCAAGTGCACATCTCGTTGGTGCATTTAgaggagaaatttttccctTGCGAATTTTGTTGTAAAAAGTACGAATCGAAAAACAGCCTCAGAATGCACATGCTATCGCACGACACGCCTAATAATTATAGCTGCGCTCAGtgcaaacgaatttttaaatcaaagaaGAAACTGGAAACGCACGAACAGAAACACACCCAAgagaaacgatttttttgttcggttTGCGAGAAACGTTTTACGTCTCAGTCTAAACTAGATATTCATACGAAAATTCACACCGGTGAACGACCGTTTGGCTGCGAATACTGCCCTAAGCGTTTCATAACGCGTTGGAAGCAGAAATTGCATACGCGAATACATACCGGCGAGAAACCGTTCTCTTGTGTCACTTGTCGTAAATGTTTCATTTCCAAAGATAAGCTGCAAACGCATTTACGAGTTCACAAAGGATTGAAATTGTTTGCTTGCGAACAGTGCGACAAGAAGTTTTCTACCAATGACCAACTGCGACTGCATACGACGACGCACAGCGGAGAAAAAGCATTCGGTTGCGATTTATGCGAAAAGCGCTTCATTTCTCGTTCCAAGCTCCAGATACACGTTCGCATGCACACCGGCGAGAGACCGTTTGCCTGTCAAGTCTGTGGCCGCAGCTTCATATCGAATCATAAATTGCAGACTCATTTCAGAACGCATAGCGGCGAGAAACCTTTCGAATGCGACCACTGCAACAAACGCTTCACCTCCAAAGAACTGCTACAGTCGCACATCAGTCAAACACACTTCGGTTTGAAGCCGTTCCACTGCGACACGTGCGAAAAACGCTTCGTCAGCCGGTACAAGCTGCAGTTACACATTCGCAGCCATACCGGAGAGAAACCATTCGGTTGCGAGTACTGCGAAAAATCCTTCGTCACGCGGTACAAGCTGCAGGTGCATTTGCGTATTCATACCGGCGAACGACCTTTTCCGTGTTACCTTTGCGAGAGGTGTTTCATATCGAACGATAAACTACAGGTGCATATTAGATCTCATACCGGCGAACGGCCCTATATGTGCGAGCATTGCAACAAAGCGTTCATATCTAGCGATAAGCTGTTGATGCATGTGCGAATCCACAACGGTGACAAACGTTTCAGCTGCGAAACTTGCGAAAAAAGCTTCATCACCAGATATAAATTGCAGCTACATACGAGAACCCATACGGGCGAAAAACCTTTCGTGTGTACTGTCTGTGCTAAGGGTTTCATCACCAACGATAAGTTGAAAGTTCACACTCGTACGCATACTGGCGAGAAACCTTATATTTGTGTTTACTGCAACAAAGGATATATAACTAACTGCAAATTACAAGTTCATCTTAAAACGCACACCGACGAAACCATTCTGCGAAGTGTTCACTGGTTATTGCAGTAA
- Protein Sequence
- MKELIDTTHKEDVFINNISNNETSEKLNLETLVQDEKAENPTEVPNGITVSTSEQKTIVHAESNLDVDNTPDGTIRSSKLVTKKNKHIKERVRLAKCKLCAESFTSRESLQGHINTVHAKQKEFNCENCDKDFTSSRLLEKHLSTHQKEKLYECHCCGETFCDNNALQVHISLVHLEEKFFPCEFCCKKYESKNSLRMHMLSHDTPNNYSCAQCKRIFKSKKKLETHEQKHTQEKRFFCSVCEKRFTSQSKLDIHTKIHTGERPFGCEYCPKRFITRWKQKLHTRIHTGEKPFSCVTCRKCFISKDKLQTHLRVHKGLKLFACEQCDKKFSTNDQLRLHTTTHSGEKAFGCDLCEKRFISRSKLQIHVRMHTGERPFACQVCGRSFISNHKLQTHFRTHSGEKPFECDHCNKRFTSKELLQSHISQTHFGLKPFHCDTCEKRFVSRYKLQLHIRSHTGEKPFGCEYCEKSFVTRYKLQVHLRIHTGERPFPCYLCERCFISNDKLQVHIRSHTGERPYMCEHCNKAFISSDKLLMHVRIHNGDKRFSCETCEKSFITRYKLQLHTRTHTGEKPFVCTVCAKGFITNDKLKVHTRTHTGEKPYICVYCNKGYITNCKLQVHLKTHTDETILRSVHWLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01262769;
- 90% Identity
- -
- 80% Identity
- -