Plon002633.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- retn
- Assembly
- GCA_900064475.1
- Location
- FIZU01034365.1:15973-27751[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-19 4.1e-16 59.5 0.0 15 89 6 78 1 78 0.93 2 2 1 3.4e+03 -1.1 0.0 4 62 105 168 102 177 0.64
Sequence Information
- Coding Sequence
- ATGCAGGTAGCTCTTGAAAGGGaAACTCCTGTAACCAGGCTGCCAATAATGGCGAAATCCGTGTTAGATTTGTACGAATTATACAAGCTAGTTGTACAAAGAGGCGGTCTCGTAGATGTTATCAATAAGAAATTATGGCAAGAAGTAATTAAAGGATTGAATCTTCCATCATCTATAACATCAGCAGCTTTCACATTACGCACACAATACATGAAGTTCCTATACCGCTACGAATGTCACAAATTGGACTTGAGCAAACCGCACGAACTGCAAGCGGCCATCGAGGGTAATAAACGCGAAGGCAGGAGAACCAGCTACTACGGAGATTTAGGCCAGATGCACAGTCCAAACAGCAACGGGCCCAATAATGGCCATCCTCCTACATCCATGCATCACGGTCAATCGCAAATGTCGCCGGTTAGTTTGGTAACCACTTCCACCTCGAACACCGGTAGCAATCGTCTGCAGATGAATGGCCATTCCAACCAGTTTGCTAGTCATACTGGTAACGCATCCATTCCTAGCGCTCACGGTATATCTCCTTTAATATTGCAAGGTTCGTCTCCTGAATTGCCTGAACCGAGTAATTTAAGCGGTTTCATGACCCAGCTAGCGTTGTGGAATTTATACAACGGTGCGATGAAAACGCCGCTTCAGCAAGCTCCAGTATTACCATTCCAACCTGCCAGGCCGCCGagtcaaaattccaataatgAAGCACCCTTGGATTTGGGTAAAAATCGTAAGGAAGATAGGACTAGTTTGGATTTACCGGCGCCCAAGAGAGAGGCTCGAGATAATGATGCCGACGATGAGGACGAAAACGAAACCGAAGATACCGATAGTGATTCGGATGATGAGCTGGAGTGTCAGATACCTTTGAATAATTCTAGTCAAGACACGGAAAGCTCAGTCAATTCGTCTCCCGTTgtagtgaaaatcaaaatcaacggTACTAAATATAGAGGAGTGTTACATCCGAGAGTAACGAAAAGGCCGAAAGTTGGACCGTTGCAATAA
- Protein Sequence
- MQVALERETPVTRLPIMAKSVLDLYELYKLVVQRGGLVDVINKKLWQEVIKGLNLPSSITSAAFTLRTQYMKFLYRYECHKLDLSKPHELQAAIEGNKREGRRTSYYGDLGQMHSPNSNGPNNGHPPTSMHHGQSQMSPVSLVTTSTSNTGSNRLQMNGHSNQFASHTGNASIPSAHGISPLILQGSSPELPEPSNLSGFMTQLALWNLYNGAMKTPLQQAPVLPFQPARPPSQNSNNEAPLDLGKNRKEDRTSLDLPAPKREARDNDADDEDENETEDTDSDSDDELECQIPLNNSSQDTESSVNSSPVVVKIKINGTKYRGVLHPRVTKRPKVGPLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263141;
- 90% Identity
- iTF_01263141;
- 80% Identity
- -