Plon010048.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- Negr1
- Assembly
- GCA_900064475.1
- Location
- FIZU01066334.1:21500-32384[+]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0018 15 6.1 0.0 61 98 10 47 5 69 0.79 2 2 1.9e-06 0.015 15.8 0.0 31 98 84 154 79 167 0.82
Sequence Information
- Coding Sequence
- ATGTGCCGGATAAAGGTAGCTTGGCTGCGTGTCGACACCCAAACCATATTAACCATACATAGTCACGTGATAACAAAAAACCATCGAATAGCGGTCACGCAGAGTGACAAACGCATGTGGTATTTACACATTCGCGAAGTTCAAGAAGCAGACCGCGGATTCTACATGTGCCAAATAAACACAGACCCGATGAAGAGTCAAGTTGGCTATTTAGATGTCGTAGtaCCTCCAGACATCTTGGACTATCCTACCAGCACAGATATGGTGGTACAAGAGAATAGCAACGTCAGTTTGACGTGTGCGGCTTCCGGGTCACCAACTCCGCGTATAACGTGGCGTAAAGAAGGCGGAGAATTGATTGCCCTAAATGGCCAAGAAGTTTCGATGGTCGAAGGATCCACGTTAAACATAACCCGAGTGAAACGGTTACACATGGGAGCTTATCTATGCATCGCATCAAATGGTATTCCACCTACAGTCAGTAAAAGAATCATGCTCGATGTGCAATGGTTATTTGACGGGTTCGAGTGCGTGTCCGGCGATGCAAAGGCATAG
- Protein Sequence
- MCRIKVAWLRVDTQTILTIHSHVITKNHRIAVTQSDKRMWYLHIREVQEADRGFYMCQINTDPMKSQVGYLDVVVPPDILDYPTSTDMVVQENSNVSLTCAASGSPTPRITWRKEGGELIALNGQEVSMVEGSTLNITRVKRLHMGAYLCIASNGIPPTVSKRIMLDVQWLFDGFECVSGDAKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -