Pter027273.3
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- grau
- Assembly
- GCA_951394005.1
- Location
- OX596076.1:105646222-105652853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.039 3.7 9.3 1.6 3 23 154 175 153 175 0.93 2 23 0.059 5.6 8.7 0.1 6 23 185 202 185 202 0.99 3 23 0.0039 0.37 12.4 2.4 1 23 208 231 208 231 0.98 4 23 0.15 14 7.4 5.3 2 23 277 299 276 299 0.93 5 23 3.7 3.5e+02 3.1 0.2 6 23 309 326 309 326 0.96 6 23 4 3.8e+02 2.9 5.8 2 23 409 431 408 431 0.89 7 23 0.041 3.9 9.2 0.8 6 23 441 458 441 458 0.99 8 23 0.023 2.2 10.0 4.2 1 23 464 487 464 487 0.97 9 23 0.017 1.6 10.4 3.9 2 23 646 668 645 668 0.95 10 23 0.3 28 6.5 0.1 6 23 678 695 678 695 0.98 11 23 0.011 1.1 11.0 2.2 1 23 701 724 701 724 0.98 12 23 0.071 6.7 8.5 5.4 3 23 762 783 760 783 0.93 13 23 2.1 2e+02 3.8 0.2 6 23 793 810 793 810 0.96 14 23 0.0074 0.7 11.5 2.9 2 23 896 918 895 918 0.93 15 23 0.15 14 7.5 0.4 6 23 928 945 928 945 0.98 16 23 2.4e-05 0.0023 19.4 0.7 1 23 951 974 951 974 0.98 17 23 0.0083 0.79 11.4 3.4 3 23 1021 1042 1019 1042 0.93 18 23 0.0006 0.057 15.0 2.4 1 23 1099 1121 1099 1121 0.98 19 23 0.00038 0.036 15.6 0.7 1 23 1129 1152 1129 1152 0.97 20 23 0.19 18 7.1 0.2 3 23 1167 1187 1165 1187 0.96 21 23 5.6e-05 0.0053 18.2 1.3 1 23 1198 1221 1198 1221 0.94 22 23 0.00067 0.064 14.8 0.8 1 23 1249 1271 1249 1271 0.97 23 23 0.018 1.7 10.4 3.2 2 23 1278 1300 1277 1300 0.94
Sequence Information
- Coding Sequence
- ATGTCTGCAGAGCAGGAAACCTGTTGTTTGTGTTGCAAAACTTATGATGTTTATCATGAATTATTTAACGATGTGGAAGAATCAAATTCTGTTTACGAAATAACAGAGAATTATTTTCCTGAGGAGATGCTGAAATCTAAGGAACCTCTCGAATGCAATGTTTTATGTTCAAAATGTTGGAACACCATACTCGATTTTCATACATTCAGAAGAACTATATATGATGCTCACGAtgatttaacattaaaatataatagttaTCTTACCGATACTGGAAATTGCGCCACCACTGAAGAAGTTATTATTAGTAAAAGTGAATTTGATGATTTGGTAAATGAAGATGAACACTTTCCCTCAGATAATAGCATGGAAATTGCAAATACTAAAGAATTAAGAGCCAAAATGTTACAAGTAAAAGAAACGCAAgatataatttctaaatgcaTGCCGGATATACTTTGTTATATATGTCAACaatcctataaaaaatattctttattgcGAAACCATTTCAACGAAAAACATCCCGCGTTACAGTTTTATGTTATATGTtgtgataaaaaatttcctatacgTTCTTTACTTGTGAATCATTTACGCCTTCACCTTAATCCAGACCTTTACAAATGCGACATTTGTGGTGAGCGAAAAACAAGTCAACGATATTTAAATAATCATAAGCGGAAGCAGCATGAAAAACATCAGTTGAATTTAGATAGTGACTGTGAAAGTAGTTCAGCTCGTATTCGAGAGGAAAATGCTAAAGAATCTCGTTtggaaaaagtaaaagaatttgAAGAGTTTATCCAGAAAAAAATGCCGCTAATTGAATGCCATGCTTGTCATAAAACATTCAATATGTTTACCTCATTGCAAAAACATTTCAAAGAACGCCATCCGTTACTTAAGTTttatgtaatttgttgtgaAAGAAGAATATCTCAAAGATCAGTACTTGCGCAGCATTTACGTCTGCACGATAAAAATCAATCAGTCAAACATTGTGATAAACTTATTGATTCTATTTCCGAGACGGATATCAAATATGCTAAGGAAATTAATGTTAATGCAGATCATTCAACTGATGAAATTATAGCTACTGGAGATATTTCATGTAACGACGAATTGATCCATTTAGATAGACCTAACATTGAAGCTGAAAATCCAAAGGAATTAAATGAAAACGAAAAAGAAGATATGATTGCTAAATATATTCCAGTTCTTTATTGTCATGAATGCAATCAATCTTTcgaaaaattctcttttttgCGGTGTCACTTCAGAGAAGATCATCCTAATTTGCAGTTTTATGTTATTTGTTGTGGTAAAAAATTTCCCGTACGACATTTACTTTTAAGTCATTTACGCCTGCACATTAATCCCGAACTATATAAGTGCGACATTTGTGGACAGTGTAAAACGACCCAACGATATTTAAACAATCACAAGCTGAAAATGCATGGAGACCATAAGTCCAGTAATGATAGTTATTGTGAAAGTACTTCTgcaaataatattcatattaaaGAAGAAAATGATAAGGAATTACATTTCCATTTCATTACCGAACAATCAATGCAGAACAGTTGTGATAATGATAGTGAATGTGAAAGTACTTCTACAAgaaatattcatattaaaaatgaaaatttcaatttagaTCAATTAATACAGAATAGTTGTGATAATACATCTAATGTTGAAATCATACCTAAAAGAGAACATAAACTTACTACAGATGATATTGTTGATGAGGTTATTGTTAGTGGAGATGTTTTAAAACAAGAAGAAATAATTCCTTTAGATAATAGTGCTTACATAGACACTTCAACAATAAATTCAAGCAGTTTAATTGAAAATGCTGAAGAatcaaatatcaaaaaaataaaagataaagaaaaatatgataTCATTGCTAAATGTATGCCGGATATTTACTGTTACGAATGTCATCAATCGTTCAAAGAATTCTCCTTATTGCGTAACCACTTCAAAAGACAACATCCCAAGTTACAGTTTTATGTTATTTGCTGTGAGAAAAAATTTCCCATACGATCTTTACTTGTGAGTCATTTACGTCTTCACATTAACCCTGAATTGTACAAATGCGACATTTGTGGCGAGTGTAAAACAACTCAGCGATATTTAGACAATCACAAGCGTATCATTCATGAAAATCGTATTTGGAATTACAGTTTCCAAGTGGAAAATTCTAGAGAAGCTCgttggcaaaaaataaaagaattggaAGATTATATTTCTAAAACTATGCCGGAAATATGTTGCCATGAATGCCAACAACCATTCAATAAATTCtctttattacaaaaacattTCAAAGAACGACATCCAATGCTTCAGTTTTATGTAATGTGTtgtgaaaagaaaatatatcaaCGCTCTGCCTTAGCCTATCATTTACGACAACACATAAATCCTGACCAatcaatttattatattaatgaaCTCGAAGAGAcaataaatcaaaatacagAGGTAGTTATTGTTGGTAATGGTCAGTTAGATGACGTTTTAAGTGAAGAAGATGTAATGTTAGATACCGGCAATTGCGAAAGCACATCGACAAAAGATACCAGTATACAAGTTGAAAATAGTAAAGATTCAAGTGtggataaattaaataaagaaaatgataATATAATTGCCGAATACATGCCCAAGATTCAGTGTCATGTATGTCGGAAGTCGTTCAAAGAGTTCGGTTCATTGCGGATCCACTTTAAAGAAAAACATCCGTCGTTTCAGTTTTATGTCATGtgttgtaaaagaaaatttcctatccGTTCTTTACTTGTAAGACATTTACGACTGCACAAAAATCCCGACTTGTATAAATGCAACATTTGTGGTGAGCGTAAAACAACACaaagaaatttagaaaatcatatGCGCATCTTACATAAAATTCCGGGGACAAGTTATGACAGTGATAGTTCTATTGAAAAGAATCGTATACAGGAGGGAAACTTTAAAGGGCCTAGTTCGGAAAAAGTAAAAGAGTTGGAAGATTTTATTACGGAAAATATCTCGAAAATTAATTGTTATGCATgcaataaatcatttaaaaaattttctttattaaagaaacattttaagaAGCAACATCCtttgtttcaattttatgtaaattgcTGTGGAAGAAAAATTTCTCAACGCTGTATACTTGCAAGACATTTACGTCTGCATATCAATACCGACGAATATAAATGTGTCGAGAGTCTAATGTGTCAAGAAAGCGAACAAAAGCATCTACATGAAAATCTGAAACCAAATTATGAATGCCAGCTTTGCcaaaagacatttttttatgaaaatagtcTTAAATCTCACCTTCTAAAACACAATGATTCAACATTAGGAAACTTTTCATGTCCATATTGTCCGCGAAAATATATCCTCAAAAGACAGCTGCAGGGACATATTAAAATGACCCATAGTAAATTATTAACGAATACAAAATCGACAACCAGTTCAATATGTGAACATTGTGGTGATGTCCTTATTAGCCCTTATTACGTTCGAAAACATCGCATAATGCACGgtcaaattaaaacaaaaccaAGAAAAAACTACAAATGTGATATTTGCAATAAAACTCTAACAAGGTTGGAAAGTTTGAAacgtcataaaattttaagacatTCTGCTAATAGTACCGAATTTACTTCCAAGGATGCCTTAAtgcaaaacaaaacaaacgTGCCTGCAAAAACTAAAAGACAATTTAAATGTATTGTGTGCGCAAAAGTCTTTCGGACACAAAAAGATATGATTTTGCATATGAAAACTCATacgaaaaataaattacaaaaatgtccAGATTGTAATGAAGAATTTACTAGATACTCCAATATGTTATGTCATCGTAGACAATCTCATCcggaagaatttgaaaaaaatagaaagtatGCACTGAGAAAAAAGGTGTAA
- Protein Sequence
- MSAEQETCCLCCKTYDVYHELFNDVEESNSVYEITENYFPEEMLKSKEPLECNVLCSKCWNTILDFHTFRRTIYDAHDDLTLKYNSYLTDTGNCATTEEVIISKSEFDDLVNEDEHFPSDNSMEIANTKELRAKMLQVKETQDIISKCMPDILCYICQQSYKKYSLLRNHFNEKHPALQFYVICCDKKFPIRSLLVNHLRLHLNPDLYKCDICGERKTSQRYLNNHKRKQHEKHQLNLDSDCESSSARIREENAKESRLEKVKEFEEFIQKKMPLIECHACHKTFNMFTSLQKHFKERHPLLKFYVICCERRISQRSVLAQHLRLHDKNQSVKHCDKLIDSISETDIKYAKEINVNADHSTDEIIATGDISCNDELIHLDRPNIEAENPKELNENEKEDMIAKYIPVLYCHECNQSFEKFSFLRCHFREDHPNLQFYVICCGKKFPVRHLLLSHLRLHINPELYKCDICGQCKTTQRYLNNHKLKMHGDHKSSNDSYCESTSANNIHIKEENDKELHFHFITEQSMQNSCDNDSECESTSTRNIHIKNENFNLDQLIQNSCDNTSNVEIIPKREHKLTTDDIVDEVIVSGDVLKQEEIIPLDNSAYIDTSTINSSSLIENAEESNIKKIKDKEKYDIIAKCMPDIYCYECHQSFKEFSLLRNHFKRQHPKLQFYVICCEKKFPIRSLLVSHLRLHINPELYKCDICGECKTTQRYLDNHKRIIHENRIWNYSFQVENSREARWQKIKELEDYISKTMPEICCHECQQPFNKFSLLQKHFKERHPMLQFYVMCCEKKIYQRSALAYHLRQHINPDQSIYYINELEETINQNTEVVIVGNGQLDDVLSEEDVMLDTGNCESTSTKDTSIQVENSKDSSVDKLNKENDNIIAEYMPKIQCHVCRKSFKEFGSLRIHFKEKHPSFQFYVMCCKRKFPIRSLLVRHLRLHKNPDLYKCNICGERKTTQRNLENHMRILHKIPGTSYDSDSSIEKNRIQEGNFKGPSSEKVKELEDFITENISKINCYACNKSFKKFSLLKKHFKKQHPLFQFYVNCCGRKISQRCILARHLRLHINTDEYKCVESLMCQESEQKHLHENLKPNYECQLCQKTFFYENSLKSHLLKHNDSTLGNFSCPYCPRKYILKRQLQGHIKMTHSKLLTNTKSTTSSICEHCGDVLISPYYVRKHRIMHGQIKTKPRKNYKCDICNKTLTRLESLKRHKILRHSANSTEFTSKDALMQNKTNVPAKTKRQFKCIVCAKVFRTQKDMILHMKTHTKNKLQKCPDCNEEFTRYSNMLCHRRQSHPEEFEKNRKYALRKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259388;
- 90% Identity
- -
- 80% Identity
- -