Pazu014360.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- grau_1
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000471.1:233720-245763[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.034 1.8 9.4 1.9 3 23 153 174 151 174 0.92 2 24 0.057 3.1 8.7 0.1 6 23 184 201 184 201 0.99 3 24 0.0015 0.08 13.7 4.1 1 23 207 230 207 230 0.98 4 24 0.11 5.9 7.8 4.7 2 23 276 297 275 298 0.94 5 24 0.58 32 5.5 0.8 6 23 308 325 308 325 0.98 6 24 0.0063 0.34 11.7 4.4 2 23 413 435 412 435 0.94 7 24 0.027 1.5 9.7 0.8 6 23 445 462 445 462 0.99 8 24 0.012 0.65 10.8 4.0 1 23 468 491 468 491 0.97 9 24 0.15 8.1 7.4 3.1 2 23 641 663 640 663 0.95 10 24 0.69 37 5.3 0.6 6 23 673 690 673 690 0.97 11 24 0.011 0.58 11.0 2.2 1 23 696 719 696 719 0.98 12 24 0.0051 0.27 12.0 3.9 2 23 756 778 755 778 0.93 13 24 2.1 1.1e+02 3.8 0.2 6 23 788 805 788 805 0.96 14 24 0.014 0.75 10.6 2.3 2 23 891 913 890 913 0.93 15 24 0.081 4.4 8.2 0.4 6 23 923 940 923 940 0.98 16 24 1.6e-05 0.00087 19.9 1.1 1 23 946 969 946 969 0.98 17 24 0.0017 0.089 13.5 1.9 3 23 1019 1040 1017 1040 0.95 18 24 2.2 1.2e+02 3.7 0.8 6 23 1050 1067 1050 1067 0.98 19 24 0.0049 0.26 12.0 3.1 1 23 1099 1121 1099 1121 0.97 20 24 0.00044 0.024 15.3 0.5 1 23 1129 1152 1129 1152 0.97 21 24 0.22 12 6.8 0.3 3 23 1167 1187 1165 1187 0.96 22 24 0.00011 0.006 17.2 1.6 1 23 1198 1221 1198 1221 0.97 23 24 0.006 0.33 11.8 0.7 1 23 1249 1271 1249 1271 0.97 24 24 6.7e-05 0.0037 17.9 1.1 2 23 1278 1300 1277 1300 0.96
Sequence Information
- Coding Sequence
- ATGTCTGCTGATGAGGAAACCTGTTGTTTGTGTTGTGAAACTTACGATGTATATCATGAATTATTTAACGAAGTTGAAGAATCAAATTCTGTTTACCAAATAGCAGAGACCTATTTTCCTGAGGAGATGCTGAAATCTAAGGAACCTCTCGAATCCAATGTTTTGTGTTCAAAATGTTGGAATACCATACTCGATTTTCATACATTCAGAAAAACTATATATGATGCTCACGATACTTTAAAATTAAAATATAATAGTGATCTTATCGATACTGCAAATTGTACCACTGAAGAAGTTATTATTAGTAAAAGAGAATTTGAAGATTTGTCGTATGAAGAGGAACCATTTCCCTCAGATAATAGCATTGAAATTGCAAATACTAATAATATTAGATCCAAAATATTAGAAGATAAAGAAATGCAAGAGATAATTGCTAAATGTATGCCGGATATGTTTTGTTATATATGTCAACAATCATATAAAAAATATTCTTTATTGCGGAACCATTTCAACGAAAAACATCCTACATTACAGTTTTATGTTATCTGTTGTGATAAAAAATTTCCTATACGTTCTTTACTTGTGAATCATTTACGCCTTCACCTTAATCCTGACCTTTACAAATGTGACATTTGTGGTGAGTGTAAAACGAGCCAACGAAATTTAAACAATCATAAGCGGAAACAACATGAAAAAGATCAGTTAAATTTAGATAGTGATTGTGAAAGTAGTTCAGCTCGTATTCGAGAGGAAAATGCTAAAGAATCTCGTTTGGAAAAAGTAAAAGAATTTGAAGAGTTTATCCAGAAAAAAATGCCGTTAGTTGAATGTCATGCTTGTTATAAAACATTCAATATGTTCTCCTTATTGCAAAAACATTTTAAAGAACACCATCCGTTACTAAAGTTTTATGTAAATTGTTGTGGAAGAAGAATATCTCAAAGATCAGTACTTGCGCATCATTTACGTCTGCACGATAAGGATCAATCAGTCAGAAATACTGATACACTTATTGATTCTATATCCGAGACTGAAATCATATATGGTAAGGAAATTATTGTTACTGCAGATCATACAACTTATGAAGTTATAGCTACTGAAGATATTTCATATAAAAACGAATTGATTAATTTAGATGTTAACGATTTCAATAGACCTAACTTTGAAATTGAAAATGCAAAGGAATTCGATGAAAACGAGAAAGAAGATATAATTGCTAAATATATACCAGTTCTTTATTGTCATGAATGCAATCAATCTTTCAAAAAATTCTCTTTTTTGCGCAGCCACTTCAGAGAAGATCATCCTACTTTGCAGTTTTATGTTATTTGTTGTGGAAAAAAATTTCCTGTACGCCATTTACTTTTAAATCATTTACGTCTGCACGATAATCCCGAGCTATATAAGTGCGACATTTGTGGAGAGTGTAAAACGACTCAACGATATTTAAACAATCACAAGCAAAAAATGCATGGAAACCTTAAGTCCAGTAATGATAGTGATTGTGAAAGTACTTCCGCAAAAAATACCCATATTAAAGAAGAAAATGCTAAAGAATTTCGTTTGAAAAAAGTTGAAGAATTTGAAAATATTATTTCGCAACACATGCCTTCAAATCATTCAGATTTGTATATCAGTACAGATCATTCAATGCAAAATACTTGTGATAATACATCTAATGTTGAAATCATATATAATAGAGAACACAAACTTACTACAGATGAAATTGCTGATAAAGTCATTGCTAGTGAAAACGTTTTAAAAGAAGAAGAAGAAATAATTCCATTAGATAAGAGTGCCTGCATAAACACTCCAACAATAAATTCTAGCAGTTTAATTGAAAATGGTGAAGAATCAAGTATCAAAAAATTGAAAGAGAAAGAAAAATATGATATCATTGCTAAATGTATGCCGGATATTTACTGTTATGAATGTCATCAATCGTTCAATGaattttccgtattgcgtaatcacttcaaaagacaacatcccaaattacagttttacgttatttgctgtgagaaaaaatttcccatacgatctttacttgtgcgtcatttacaccttcacattaatcctgagttatacaaatgtgacatttgtgGCGAGTGTAAAACAACTCAACGATATTTAGACAATCACAAGCGTATCATTCATGAAAATCGTAATTCCAATTGTAGTTTCCGAGAGGAAAATGCTAGAGAAGCTCGTTGGCAAAAAATAAAAGAATTGGAAGATTATATTTCTAAAACTATGCCGAAAATATATTGCCATGAATGCCAACAATCATTCAATAAATTCTCTTTATTGCAGAAACATTTCAAAGAACGACATCCATTGCTTCAATTTTATGTAATGTGTTGTGAAAAGAAAATATATCAACGCTCTGCTTTAGCCTATCATTTACGACTACACATCAATCCCGACCAATCAATTGATAATAGCAATAAACTCGAAGAAACACTAAACCATAACACTGAAGTAGTTATTTTTGGTAATGGTCAGTTTGAAGACGTTTTAAGTGAAGAAGAAATAATGTTAGATACCGGCAATTGCGAAATCACATCGACAAAAGATACCAGTATAAAAGTTGAAAATAGTAAAGATTCAACTTTGAATAAATTACATGAAGAAAAAAACGATATAATTGCCGAATACATGCCTGACATTCAGTGCCATGTATGTCGGCAGTCGTTCACAGAATTCGATTCATTGCGGATTCACTTTAAAGAAAGACATCCGTCGTTTCAATTTTATGTCATGTGTTGTAAAAGGAAATTTCCTATCCGCTCTTTACTTATAAGACACTTACGACTGCACAAAAATCCCGACCTGTATAAATGCAACATTTGTGGTGAGCGTAAAACAACACAACGAAATTTAAAAAATCACATGCGGATCATACATAAAATTCTGGGGACAAGTTATGATAGTGATTATGAAAGTAATTTAAGTGAAAAGGTTCGTATGCAGGAGGGAAAATCTAAAGGGCCTAGTTCGGAAAAAGTAAAAGAATTAGAAGATTTTATTACGGAAAATATGTCGAAAATTGATTGTTATGTATGCAATAAATCATTCGAAAAATTTTCTTTATTGAAGAAGCATTTCAATAAGCAACATCCTTTGTTTCAATTTTATGTAAATTGTTGTGGAAGGAGAATATCTCAACGCTGTGTACTTGCAAGACATTTACGTCTGCATATCAATTCCGATGAATACAAATGTGTCGAGAGTCTAATGTGTCAAGAAAGTTTAAACGATGACAAGGATCGACATGAAAATCTTAAACTAAATTATGATTGCCAGCTTTGCCAAAAGAGATTTTTTAATGAAAATAGTTTTAAATCTCATCTTCTTAAACACAATGATTCAATATTAAGAAACTTTTCATGTCCATATTGCCCGCGAAAATATATCCTTAAAAGACAGTTGCAGGGACATATTAAAATAACCCATAGTAAATTATCAACAGATACTAAATCGACAACCAGTTCAATATGTGAACATTGTGGTGATGTTCTTATTAACGCTTATTATGTGCGAAAACATCGCATAATGCATGGTCTAACTGAAGCAAATACAAAAAAAACGTATAAATGTGATATTTGCAATAAAATTCTAACAAGAATGGAAAGTCTGAAACGTCATAAAAGATTAAGGCATTCCGATAGTACTTCGGAATTTATATCCAATAATGCCTTAATGCAACACGAAACAAACATGCACGCAATAATTAAAAGACAATTTAAATGCATTGTGTGCGCGAAAGCTTTTCAGAGACAAAAAGATATGATTTTGCATATGAAAACTCATACGAAAAATAAACTACAAAAATGTCCAGATTGTGATAAAGAATTTACTAGATACACCAATATGTTATATCATCGTAGACAGGCTCATCCGGAAGAATTTGAAAAAAATAGAAAGTATGCACTGAGAAAAAAAGATGGGCGGTCCAAATGTTAA
- Protein Sequence
- MSADEETCCLCCETYDVYHELFNEVEESNSVYQIAETYFPEEMLKSKEPLESNVLCSKCWNTILDFHTFRKTIYDAHDTLKLKYNSDLIDTANCTTEEVIISKREFEDLSYEEEPFPSDNSIEIANTNNIRSKILEDKEMQEIIAKCMPDMFCYICQQSYKKYSLLRNHFNEKHPTLQFYVICCDKKFPIRSLLVNHLRLHLNPDLYKCDICGECKTSQRNLNNHKRKQHEKDQLNLDSDCESSSARIREENAKESRLEKVKEFEEFIQKKMPLVECHACYKTFNMFSLLQKHFKEHHPLLKFYVNCCGRRISQRSVLAHHLRLHDKDQSVRNTDTLIDSISETEIIYGKEIIVTADHTTYEVIATEDISYKNELINLDVNDFNRPNFEIENAKEFDENEKEDIIAKYIPVLYCHECNQSFKKFSFLRSHFREDHPTLQFYVICCGKKFPVRHLLLNHLRLHDNPELYKCDICGECKTTQRYLNNHKQKMHGNLKSSNDSDCESTSAKNTHIKEENAKEFRLKKVEEFENIISQHMPSNHSDLYISTDHSMQNTCDNTSNVEIIYNREHKLTTDEIADKVIASENVLKEEEEIIPLDKSACINTPTINSSSLIENGEESSIKKLKEKEKYDIIAKCMPDIYCYECHQSFNEFSVLRNHFKRQHPKLQFYVICCEKKFPIRSLLVRHLHLHINPELYKCDICGECKTTQRYLDNHKRIIHENRNSNCSFREENAREARWQKIKELEDYISKTMPKIYCHECQQSFNKFSLLQKHFKERHPLLQFYVMCCEKKIYQRSALAYHLRLHINPDQSIDNSNKLEETLNHNTEVVIFGNGQFEDVLSEEEIMLDTGNCEITSTKDTSIKVENSKDSTLNKLHEEKNDIIAEYMPDIQCHVCRQSFTEFDSLRIHFKERHPSFQFYVMCCKRKFPIRSLLIRHLRLHKNPDLYKCNICGERKTTQRNLKNHMRIIHKILGTSYDSDYESNLSEKVRMQEGKSKGPSSEKVKELEDFITENMSKIDCYVCNKSFEKFSLLKKHFNKQHPLFQFYVNCCGRRISQRCVLARHLRLHINSDEYKCVESLMCQESLNDDKDRHENLKLNYDCQLCQKRFFNENSFKSHLLKHNDSILRNFSCPYCPRKYILKRQLQGHIKITHSKLSTDTKSTTSSICEHCGDVLINAYYVRKHRIMHGLTEANTKKTYKCDICNKILTRMESLKRHKRLRHSDSTSEFISNNALMQHETNMHAIIKRQFKCIVCAKAFQRQKDMILHMKTHTKNKLQKCPDCDKEFTRYTNMLYHRRQAHPEEFEKNRKYALRKKDGRSKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261226;
- 90% Identity
- -
- 80% Identity
- -