Basic Information

Insect: Protophormia terraenovae
Gene Symbol: -
Assembly: GCA_951394005.1
Location: OX596077.1:3364276-3368554[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0031 0.3 12.7 1.4 1 23 104 127 104 127 0.95

2 20 0.0012 0.11 14.0 2.1 1 23 134 157 134 157 0.96

3 20 0.037 3.6 9.3 2.3 1 23 162 184 162 184 0.96

4 20 0.0015 0.14 13.7 0.8 1 23 190 213 190 213 0.89

5 20 0.0023 0.22 13.1 2.3 1 23 219 241 219 241 0.99

6 20 1.7e-06 0.00016 23.0 0.6 3 23 249 269 248 269 0.97

7 20 0.2 19 7.0 1.7 2 23 401 423 400 423 0.90

8 20 0.00036 0.034 15.7 0.3 1 23 430 453 430 453 0.96

9 20 2.8e-05 0.0027 19.1 0.2 1 23 458 480 458 480 0.98

10 20 0.003 0.29 12.8 0.6 1 23 486 509 486 509 0.94

11 20 5.9e-06 0.00056 21.3 1.5 1 23 515 537 515 537 0.99

12 20 1.7e-05 0.0016 19.9 1.7 3 23 545 565 544 565 0.97

13 20 0.018 1.7 10.3 1.6 1 23 571 594 571 594 0.97

14 20 0.002 0.19 13.4 2.5 2 23 704 726 703 726 0.95

15 20 0.0071 0.68 11.6 1.1 1 23 733 756 733 756 0.94

16 20 7.3e-05 0.007 17.8 0.1 1 23 761 783 761 783 0.98

17 20 0.003 0.29 12.8 0.6 1 23 789 812 789 812 0.94

18 20 0.0031 0.3 12.7 3.5 1 23 818 840 818 840 0.99

19 20 9.7e-05 0.0092 17.5 3.7 3 23 848 868 847 868 0.97

20 20 0.018 1.7 10.3 1.6 1 23 874 897 874 897 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0031	0.3	12.7	1.4	1	23	104	127	104	127	0.95
2	20	0.0012	0.11	14.0	2.1	1	23	134	157	134	157	0.96
3	20	0.037	3.6	9.3	2.3	1	23	162	184	162	184	0.96
4	20	0.0015	0.14	13.7	0.8	1	23	190	213	190	213	0.89
5	20	0.0023	0.22	13.1	2.3	1	23	219	241	219	241	0.99
6	20	1.7e-06	0.00016	23.0	0.6	3	23	249	269	248	269	0.97
7	20	0.2	19	7.0	1.7	2	23	401	423	400	423	0.90
8	20	0.00036	0.034	15.7	0.3	1	23	430	453	430	453	0.96
9	20	2.8e-05	0.0027	19.1	0.2	1	23	458	480	458	480	0.98
10	20	0.003	0.29	12.8	0.6	1	23	486	509	486	509	0.94
11	20	5.9e-06	0.00056	21.3	1.5	1	23	515	537	515	537	0.99
12	20	1.7e-05	0.0016	19.9	1.7	3	23	545	565	544	565	0.97
13	20	0.018	1.7	10.3	1.6	1	23	571	594	571	594	0.97
14	20	0.002	0.19	13.4	2.5	2	23	704	726	703	726	0.95
15	20	0.0071	0.68	11.6	1.1	1	23	733	756	733	756	0.94
16	20	7.3e-05	0.007	17.8	0.1	1	23	761	783	761	783	0.98
17	20	0.003	0.29	12.8	0.6	1	23	789	812	789	812	0.94
18	20	0.0031	0.3	12.7	3.5	1	23	818	840	818	840	0.99
19	20	9.7e-05	0.0092	17.5	3.7	3	23	848	868	847	868	0.97
20	20	0.018	1.7	10.3	1.6	1	23	874	897	874	897	0.97

Sequence Information

Coding Sequence: atggatCGAAATACATTAAATTTCATCAACACTTATGCTCAATTTCCTCAACTATACGATAGTAATCATTCATTGTATGGAAATAGtgaagaaaaatcaaaatcctTAAAGAAATTAACCCAACAACTTTTAGTGCTGCAcagtataaattttaaaactgactGCCTCGCCAAGGCTATTAATCATTTACATTCTTGGTATTATCATGCGAAAAAACGTCAAGAACAACATAAGACAAAATTGAATATGGACGAAATggaatatttcaaaaagtgtgTGTTTTTACCTTCGAAAAGATTAAATGTGAAATATAATTGTaatgtttgtaataaatattttaatgaagaaAACAATTTGAAAGGTCATCTCTTTCGAAGCCATCAAATCGGTGAATTGCCATTTGATTGCGATCAATGTGGAAAGAAATTTTCCAAGAAAACTATACTGCAACAACATACACAACGTATGCATAACAGCCGTAAATATCGTtgtgaattttgcaataaactATTTGCTACTAAATCAGAACAAAACTTTCACACCCGAGTCCATACAGCAGAAAAGCCACATGTCTGTGAATTTTGTGGCAAGACATTTAGAGTAAAGACACAATTGGGTTATCATGTTACCGCAGTCCACACGAAAATACGTGCTTTCAAGTGTCATCTGTGTCCCAAAGATTTTCTTAAGAAACCCGATTTAAAGGATCATGTTAAAACACATTTAAATATACGGGATAAAATATGTGACACATGTGGCAAGGGATTTTCTAATAGCGATTCATTGCGACGTCACCGTCAAATACATTCGGAAATTAAACGTTATGCCTGTAGACTATGTGAAGCGAAATTTCACCAATTTttggaatatatacaacaaaaaccACTCATCCTAGATCAATGGGACAATACTACGGGcaaatttattgatatttataaacaattttcaattcTCTACGATGGAAAGCATCCGTTATATGGCAAATATGACAATAAGGTAATGGCTATGTCAGATATGCGCAACACCTTACTAACACAACATGACATCGATTTCAATGAAGAAATGCTTATCGATGCGATAGATCAATTGCATACGTGGTATTACTCAACGAAAGTTCGAAAACAAAAGACTGGAGAATGCTACGAAAAGTACTTCAAAATGTGCCAGTTTCTGCCTGAGAAGTGTTTAAAAGTAAAGATTGTGTGTAGCATTTGCAACAAGAACTTTCAATCAGATCACGtttttaaatatcatttaaCGAAAGTTCATAAAGTCGGAAACTTTAAATTTCAATGTGACCAATGTGGAAAGAATCTTGTTTCGAAATCTGCTCTAGTGAGTCATTCCCAAAGGGTTCACTCCATAAAGAAATATCCCTGTGAgttttgtggaaaaatgtttGCCATACGATCTGAGCTAAAAACCCATACCCTAGTCCATACGTCTGAGAAGCCACATGTGTGTGAACTATGTGGCAAAGGTTTTAGATTACGTAACAATTTGGGTCTTCATGTTACACGCATGCATAAAAGAGTTCGAGAATTTAAATGCACCATGTGTCCTAAAGATTTTTTCACGAAAGCTCTTCTAAAGGATCATATTAAGACACATTTGAATATACGCGATAAAATATGCGAAACTTGTGGTAAAGGTTTTACAAACTCTCATTCTCTAATACGTCATCGGCAATTACACTCAGAGATTAAGAAATTTGCATGTAAACTGTGTGACGCGAAATTTCATCAGTTTGTTGGACTTAATGGTCATATGAAACGTACTCataatataAAACCACTCATCCTTGATCAATGGGACAATACTACaagcaaatttattgaaatttatgccaaatttccaTTACTTTACGATGGAAAACATCCGTTATATGGCAAGTATGAGGATAAGTTAAGGGCTATATCAGACATGCACACTATCCTACTAACACAACATAACATCGATTTCAGTGAAAAAATGCTATCCGATGCCATAGATCAACTGCAATCGTGGTATTACTCAACCAAACATCGAAAACATAGGACTGACAAATGCCCtgaaaagtatttgaaaatgtgTCAGTTTTTGCCAGAGAAACGTTTAAAAGTTAAGATTGTGTGCAATATTTGCAACAAGAACTTTTACACAGAtcacaattttaaatatcacTTAACGAAAGTTCATCAAGTCGGCAATTTTTCATTCCAGTGTGATTTATGTGGcaaaaaacttatttcgaaATCCGCATTACAATGTCATGCTCAAAGGGTTCATTCCGAAAAAAAATATCCTTGCGAATTTTGTGGAAAATTATTTGCCGTACCTTCCGAGCTGAGGACCCACACTCTGGTTCATACGGCAGAAAAACCGCATGTATGTGAATTATGCGGTAAAGGTTTTAGATTGCGCAACAATTTGGGACTTCATGTCACACGTATGCACACCAAGATTCGAGCCTTTAAATGTACAATGTGTCCCAaagattttctaaagaattgcgATCTCAAGGATCACATAAAAACTCATTTAAATATACGCGACAAAATATGCGAAACGTGTGGGAAAGGTTTTACAAATTGTCATTCCTTGATACGTCATCGTCAGATACACTCTGAGGTAAAAAAATTTGCTTGTAAGCTTTGTGAcgcaaaatttcatcaattcGTGGGACTTAATGGCCATATGAAACGCACCCATAACATAGTAAAAAAGGATACCAACAATTAG
Protein Sequence: MDRNTLNFINTYAQFPQLYDSNHSLYGNSEEKSKSLKKLTQQLLVLHSINFKTDCLAKAINHLHSWYYHAKKRQEQHKTKLNMDEMEYFKKCVFLPSKRLNVKYNCNVCNKYFNEENNLKGHLFRSHQIGELPFDCDQCGKKFSKKTILQQHTQRMHNSRKYRCEFCNKLFATKSEQNFHTRVHTAEKPHVCEFCGKTFRVKTQLGYHVTAVHTKIRAFKCHLCPKDFLKKPDLKDHVKTHLNIRDKICDTCGKGFSNSDSLRRHRQIHSEIKRYACRLCEAKFHQFLEYIQQKPLILDQWDNTTGKFIDIYKQFSILYDGKHPLYGKYDNKVMAMSDMRNTLLTQHDIDFNEEMLIDAIDQLHTWYYSTKVRKQKTGECYEKYFKMCQFLPEKCLKVKIVCSICNKNFQSDHVFKYHLTKVHKVGNFKFQCDQCGKNLVSKSALVSHSQRVHSIKKYPCEFCGKMFAIRSELKTHTLVHTSEKPHVCELCGKGFRLRNNLGLHVTRMHKRVREFKCTMCPKDFFTKALLKDHIKTHLNIRDKICETCGKGFTNSHSLIRHRQLHSEIKKFACKLCDAKFHQFVGLNGHMKRTHNIKPLILDQWDNTTSKFIEIYAKFPLLYDGKHPLYGKYEDKLRAISDMHTILLTQHNIDFSEKMLSDAIDQLQSWYYSTKHRKHRTDKCPEKYLKMCQFLPEKRLKVKIVCNICNKNFYTDHNFKYHLTKVHQVGNFSFQCDLCGKKLISKSALQCHAQRVHSEKKYPCEFCGKLFAVPSELRTHTLVHTAEKPHVCELCGKGFRLRNNLGLHVTRMHTKIRAFKCTMCPKDFLKNCDLKDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEVKKFACKLCDAKFHQFVGLNGHMKRTHNIVKKDTNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01194560;
90% Identity: iTF_01194560;
80% Identity: -