Preg014424.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01172740.1:1343-12405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00028 0.029 15.8 2.6 1 23 117 140 117 140 0.95 2 19 0.00045 0.048 15.1 0.9 1 23 147 170 147 170 0.96 3 19 0.11 12 7.6 3.6 1 23 175 197 175 197 0.87 4 19 0.0011 0.12 13.9 0.8 1 23 203 226 203 226 0.89 5 19 0.019 2 10.1 2.7 1 23 232 254 232 254 0.97 6 19 1.5e-06 0.00016 22.9 0.7 3 23 262 282 261 282 0.97 7 19 0.17 18 7.1 1.7 2 23 414 436 413 436 0.90 8 19 0.00017 0.018 16.4 0.1 1 23 443 466 443 466 0.97 9 19 2.4e-05 0.0025 19.2 0.4 1 23 471 493 471 493 0.98 10 19 0.0021 0.22 13.1 3.2 1 23 499 522 499 522 0.94 11 19 4.9e-06 0.00051 21.3 1.5 1 23 528 550 528 550 0.99 12 19 1.4e-05 0.0015 19.9 1.7 3 23 558 578 557 578 0.97 13 19 0.014 1.5 10.4 1.4 1 23 584 607 584 607 0.97 14 19 0.0016 0.17 13.4 2.5 2 23 718 740 717 740 0.95 15 19 0.006 0.63 11.6 1.1 1 23 747 770 747 770 0.94 16 19 5.5e-05 0.0058 18.0 0.1 1 23 775 797 775 797 0.98 17 19 0.0025 0.26 12.8 0.6 1 23 803 826 803 826 0.94 18 19 0.0026 0.27 12.7 3.5 1 23 832 854 832 854 0.99 19 19 8.1e-05 0.0085 17.5 3.7 3 23 862 882 861 882 0.97
Sequence Information
- Coding Sequence
- atGACACAACATCATCagaatgtattaaattttaaaaatatggatcaaaatactttaaatttcatCAACACTTATGCTCAATTTCCTCAGCTATATGATGATAATCATTCATCATATGGAAAtagtaaagaaaaatcaaaatccTTAAAGAAATTAACCCAACAACTATTACAGCTGTACAATATAGATTTGAAAACTGACTGTATCGCAAAGGCTATTAAACAATTACATTCTTGGTATTATCATGCGAAAAAACGTAAAGAACAACATAAGAAACAATTGAATGTGGACGAAatggattatttaaaaatgtgtatgtttTTGCCTTCGAAAAGGTTAAATGTGAAATATAATTGTAATGTttgtaacaaatgttttaatgtgGAAGACAATTTGAAAGGTCATCTCTTTCGGAATCATCAAATTGGTGTTTTGCCATTTGATTGCGATCAATGTGGAAAGAAATTTGCCAAGAAAACTATATTACAACAACACATACAGCGTATGCATAACAGTCGTAAATATCGTTGTGAATACTGTAATAAACTCTTTGCTACTAAATCTGAACATAACTTTCACACTCGAGTCCATACAGCAGAAAAACCACATGTCTGTGAATTTTGTGGCAAGTCATTTAGAGTAAAGACACAATTGGGTTATCATGTTACTGCAGTCCACACGAAAATACGTGCTTTTAAGTGTCATCTGTGTTCCAAGAATTTTCTCAAGAAACCCGATTTAAAGGATCACGTTAAAGCCCATTTAAATATACGTGATAAAATATGCGACACATGTGGCAAGGGTTTTACTAATAGCGATTCATTGCGACGTCATCGTCAAATACATTCAGAAATTAAACGTTATGCCTGTAGGCTATGTGAAGCGAAATTTCACCAATTTTTGGAATATGTACAACAAAAACCACTCATCCTAGATCAATGGGACAATACTACGggcaaatttattgttatttatgaaaaattttcaattctctACGATGGAAAACATCCATTATATGGCAAATATGAGAATAAGCTAAGGGCTATGGCAGATATGCGCAACACCTTAAAAATACAACATGGCATCGTTTTCAATGAAGAAATGCTTAATGATGCGATAGATCAACTACATACATGGTATTACTCAACGAAAGTTCGAAAACAAAAGAATGGAGAATGCTAcgaaaagtatttcaaaatgtGCCAATTTCTGCCTGAGAAGTGTTTAAAAGTAAAGATTGTGTGTAGCATTTGCAATAAGAACTTTCAATCAGATCacgtttttaaatatcatttaacgAAAGTTCATAAAGTCGGAAACTTTAAGTTTCAATGCGACCAATGTGGAAAGAATCTTGTTTCGAAATCTGCTCTAGTGAGCCATGCCCAAAGGATTCACTCAATAAAGAAATATTCCTGTGAGTTTTGTGGAAAAATGTTTGCCATACGATCTGAGCTAAAAACCCACACACTGGTCCATACAGCTGAGAAGCCACATGTGTGTGAACAATGTGGCAAATGTTTTAGATTACGCAATAATTTAGGTCTTCATGTTACACGCATGCACAAAAGAGTCCGAGAATTTAAATGTACCATGTGTCCTAAAGATTTTTTCACGAAAGCTCTTCTTAAGGATCATATAAAGACACATTTGAATATACGCGACAAAATCTGTGAAACTTGTGGTAAAGGTTTTACAAACTCTCACTCTCTAATACGTCATCGGCAATTACACTCAGAGATTAAGAAATTTGCATGTAAATTGTGCGACGCTAAATTTCATCAGTTTGTTGGACTTAATGGTCATATGAAACGTTCtcataatatacAGAAACCACTCATCCTTGATCAATGGAACAATACCACaagtaaatttattgaagtttaTGCCAAGTTTCCATTACTTTACGATGGAAAACATCCGTTATATGGCAAGTATGAGGATAAGTTAAGGGCTATATCAGACATGCATACTACCCTACTAACACAACATAATATCGATTTCAGTGACGAAATGCTATCCGATGCCATAGATCAACTGCAATCCTGGTATTACTCAACAAAACATCGAAAACATAGGAGTGACGAATGCCCCgaaatgtatttgaaaatgtGTCGATTTTTGCCAGAGAAACGTTTAAAAGTTAAGATTGTTTGCAATATTTGCAACAAGAACTTTTACACAgatcacaattttaaatatcatttaacgAAAGTTCATCAAGTCGGCAATTTTTCATTCCAGTGTGATCTATGTggcaaaaaactgatttcgaAATCCGCTTTACAATGTCATGCGCAAAGGGTtcattctgaaaaaaaatattcttgcgaattttgtggaaaattattTGCCGTACCTTCAGAGCTGAGGACCCACACCCTGGTTCATACGGCAGAAAAACCGCATGTATGTGAATTATGCGGTAAAGGTTTTAGATTACGCAACAATTTGGGACTTCATGTTACACGTATGCACACCAAGATTCGAGCCTTTAAATGTACAATGTGTCCcaaagattttctaaaaaattgcgATTTAAAGGATCatataaaaactcatttaaataTACGCGACAAAATATGCGAAACGTGTGGTAAAGGTTTCACAAATTGTCATTCCTTGATACGTCATCGCCAGATACACTCTGAGGACAGTTTGGAAGAAgaagattttcatcaaaaatttaggtga
- Protein Sequence
- MTQHHQNVLNFKNMDQNTLNFINTYAQFPQLYDDNHSSYGNSKEKSKSLKKLTQQLLQLYNIDLKTDCIAKAIKQLHSWYYHAKKRKEQHKKQLNVDEMDYLKMCMFLPSKRLNVKYNCNVCNKCFNVEDNLKGHLFRNHQIGVLPFDCDQCGKKFAKKTILQQHIQRMHNSRKYRCEYCNKLFATKSEHNFHTRVHTAEKPHVCEFCGKSFRVKTQLGYHVTAVHTKIRAFKCHLCSKNFLKKPDLKDHVKAHLNIRDKICDTCGKGFTNSDSLRRHRQIHSEIKRYACRLCEAKFHQFLEYVQQKPLILDQWDNTTGKFIVIYEKFSILYDGKHPLYGKYENKLRAMADMRNTLKIQHGIVFNEEMLNDAIDQLHTWYYSTKVRKQKNGECYEKYFKMCQFLPEKCLKVKIVCSICNKNFQSDHVFKYHLTKVHKVGNFKFQCDQCGKNLVSKSALVSHAQRIHSIKKYSCEFCGKMFAIRSELKTHTLVHTAEKPHVCEQCGKCFRLRNNLGLHVTRMHKRVREFKCTMCPKDFFTKALLKDHIKTHLNIRDKICETCGKGFTNSHSLIRHRQLHSEIKKFACKLCDAKFHQFVGLNGHMKRSHNIQKPLILDQWNNTTSKFIEVYAKFPLLYDGKHPLYGKYEDKLRAISDMHTTLLTQHNIDFSDEMLSDAIDQLQSWYYSTKHRKHRSDECPEMYLKMCRFLPEKRLKVKIVCNICNKNFYTDHNFKYHLTKVHQVGNFSFQCDLCGKKLISKSALQCHAQRVHSEKKYSCEFCGKLFAVPSELRTHTLVHTAEKPHVCELCGKGFRLRNNLGLHVTRMHTKIRAFKCTMCPKDFLKNCDLKDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEDSLEEEDFHQKFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261182;
- 90% Identity
- iTF_01261182;
- 80% Identity
- -