Pter022037.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596076.1:451885-455659[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-13 2.2e-09 37.9 0.1 9 72 288 347 282 349 0.88
Sequence Information
- Coding Sequence
- ATGGAAGTAGACGATGCAATAGTTCAAGCAGAGCCTGTTGACGAAACAACTGTACTTGCTGGTGATGGTGGCGTAGGTGACGATGACATTGACGACAGAGAGCAGCAGACAACACCAAGTGCTTCTACGTCGTCATCGTCTAAGCAGAAACGTGCTAAAATTAAACACGATAAAGAAGAACCACCTGGTTTGTTGGAATCGCAAAATAATGACTCGGTTTTGACTGCTACCCCTTTTAAGTTAGAGGTATCGGGTTCAGAAGATGAAAAAGAAGATATGGAAGAAGGTGATAATGCCTCTAAAGTAGCAATTAGACGCAAATTATTATCAACTCCCATGGAGGAGGACTCAGCCGCCAAAGATGGTTTAGAAGAATTAGAGGAGGTGGCTATTAAAAGGAAACGCTATGAAGTAAGGAGATCTGGTTCTGAAGAGTGTTTACTGGGTTTTGATGAACTTAGCGGTGAAGCTGAATTGGTTAAAGCAGAAGTGACGGAAGAGCCTGTAGTATTAGCAGAAGAACAACCCATTGAGAGTGTTGAAGAACCTTTTAAGAGTGTAGAAATTGCTAATGAGGCTACTGAAAGTCCTTTAAATTCTCCCAAGCCCTCtaaaaagGCATCTCCTGTAACAAAAATTGCCTCGCCTGCTTTACAATCCACAAGATCGGCCTCAAAATCACCTAAAGCTCTAAAACCAAAAACACCACCTTTGGAGCCTCCTCAGCAATCTAAAACAGCTCAAAAATCTCCTCCCAAGCCTCATATAGTTGCTGATGGTGAGGAAATTAATGGCATGACACCTATAAAATCTAGTGCTACAACCAGGAAACCCATATCTCCGCAagatgaattttataaaaaaccatTTGAATATGGTTGGAAACGAGAATTGGTGTGGCGTGCCAATCCAGAGCAAAGTAAAGACAAAGCAGATGTCTACTTTATATCACCAGCTGGTAAAAAACTTAGGGCTCGTAGCGAAATTATACCATTGCTAGAGGGCGATTTGACCATCGATCATTTCTGCTTTACACGTGAGCCCTTAGGAGCTGGTCCTGAATTGGAAATTGTAAGAAGTGCTAAACCTTCTTCTAGAGCCTCAGTGCCAGCTGCTACATTGACTCCCGCTTCTGCTCCTCCCAGTATGGGAAAACGTGTTTCAAAACCGAAAGGTCCCAAAGGTGCAAGTCCTCCCCCACAAGGCTGGACCCCCAGCAAGGCTCTTAAAGTTAATAATGCTGCTTTATTAAGTAGTACTGGGGGAGTTGGAAGAGTTAGTGCAGCGCATCATTCAATACCAAGCACACCGCCCAGTAGTCGAAAACATGATATTTCTCATGGCAATGCAGCTCATTCCGCCAAGAATTCTAAAGCAAAAAaATCATCCATCAACAAAACAGAGGCGTCTTCAACGCCAGATGTTAAGAAAACAACTATAAATGTTGAATCTAAAGAACCTTGCACCGTAAATTGTCCAAAAGCTCAAGGACAAGTGCCACAACTTCAATGTACTAAATGTTTATGTCTACATCACCATGAATGTGTGGGTCTCAATCAATTCAACTCGGAATATCGAACCGCCAGCAATAGTCGTGGCAAGGAGTATATATGCGAGGCTTGTTTATCCAAGACACCAAATCAAATGTCTTCAACAGTTGCTAGCATGTCACCAGCAGTCTTAGTAAAGCCACCAGCAAATATGGTTAGCAATAAAAGACCAGAGAATAAATTTCCTCAGACTATTGCTGTGGTAAAAGGCAAGAAATACGTTATGGTGGCTAAACCTTTAGCACTGCCCAACGAACATGTcaatgatattgaaaatgatttgaaacAAATTAATGAGAGTATACGTAAAAATCGCAAACATTCAAACAATTCACTAGATGGTTCTGTACAGGCTCACAATTCTCATAATTCCATAGCGGTCGATCATTCGAATAAGTTATTTGCTACAAATTTCTTTGCCAATGTTTCATATGCTTATGATtcattgttgtgtattttaaaatatttaaaaatacatGAACGTCCTCGTGCTGCTGCAGTATGTAAATTATGGAATTTGGCTGCTAAGGATACATCACTTTGGCAAACTGTGCGTATGAAAAATTCAAAGGTTTGCAGTTGGTCTGGTTTTGCTGGAGCTTTGCGTCGTGGTGAAACTAAGCATTTGGATTTACGTAAAATGTTATTGCCTAGTGGACGTAGTGAGGATATGTGGAATGATTTCTGTGCAAATATAGGTACTGTGTGTTCTCTAGAAACCATAGATCTGTGTCGTTGCTCTGCCAGAGTTGTAGAGAGTTTATTCCAGAGCAACCGCAATTTGAAAGTAATCAACGCTTTGGCTATAAATGATGACACCATTAATCTAGAACACATTTCCCTGCTGCACTCCTTAGAAGAGCTACGTTTGCGTACTTGTGAAGCTGGAGTTTTGGCGGGAGATCTTACACCCATGGCTTCACTCTCTCAACTGACACATCTTTCTTTGACATCCATTAAAGGTTTGGGAGCTAAGAGTGTTGAGGTTTTAGGAGAATTGACAACCTTAAAATCCTTAGAATTGGGAGAATGTGGTGACTTTGATTCAACATTTGCCGAAGCTGTGTTAcccaaattaataaatttgcaaAGACTTCGTTTGGAAAACAGTCAAGTTACAAATGTGTGTACTTTGGAAATTCTTGATGCTGTGGCTAGATTGGTGCAATTAAATCAATTGGAATTGgttaattttgatataaaaccAGGGTTTGATGAGAAATTAAGTTTATGTATGAATATTAGCAAATTGCTCATCATTCCTACCTACATTTCTCAGTCGGCCACCACCAATCAAATTGTTCTCAGTGCCGTACAGCAAGTGTCTGAAACTCTTAAAGTATTCACCTGGTGTGTAACCGTTGAACTGCTCCGAGTTACAGCCCTCTATGTTGATCAGTGTGAAGAATCtacgaaaaaagaaaaacatcatTTCGATGAATGTATACCGGTATTGAAACCGGTACCGGGAGCCACCACCGGCGATGAAGATGAAGAGGAAACCGCTAAAGCTAAATCGCCCGCAGTCAAAACAGAGGACAGTTCTACTGCGACGGAAGTTCcccaaattgaaattttacctTTGGATAAAGTAGAATCTATATTAGCGGAAAATTTACCCAACACCAAGTTTACCATTGTCAAGGTGCCCTACCATGCGACTTGTAAACAACAATTAGTGGAGTTAAattag
- Protein Sequence
- MEVDDAIVQAEPVDETTVLAGDGGVGDDDIDDREQQTTPSASTSSSSKQKRAKIKHDKEEPPGLLESQNNDSVLTATPFKLEVSGSEDEKEDMEEGDNASKVAIRRKLLSTPMEEDSAAKDGLEELEEVAIKRKRYEVRRSGSEECLLGFDELSGEAELVKAEVTEEPVVLAEEQPIESVEEPFKSVEIANEATESPLNSPKPSKKASPVTKIASPALQSTRSASKSPKALKPKTPPLEPPQQSKTAQKSPPKPHIVADGEEINGMTPIKSSATTRKPISPQDEFYKKPFEYGWKRELVWRANPEQSKDKADVYFISPAGKKLRARSEIIPLLEGDLTIDHFCFTREPLGAGPELEIVRSAKPSSRASVPAATLTPASAPPSMGKRVSKPKGPKGASPPPQGWTPSKALKVNNAALLSSTGGVGRVSAAHHSIPSTPPSSRKHDISHGNAAHSAKNSKAKKSSINKTEASSTPDVKKTTINVESKEPCTVNCPKAQGQVPQLQCTKCLCLHHHECVGLNQFNSEYRTASNSRGKEYICEACLSKTPNQMSSTVASMSPAVLVKPPANMVSNKRPENKFPQTIAVVKGKKYVMVAKPLALPNEHVNDIENDLKQINESIRKNRKHSNNSLDGSVQAHNSHNSIAVDHSNKLFATNFFANVSYAYDSLLCILKYLKIHERPRAAAVCKLWNLAAKDTSLWQTVRMKNSKVCSWSGFAGALRRGETKHLDLRKMLLPSGRSEDMWNDFCANIGTVCSLETIDLCRCSARVVESLFQSNRNLKVINALAINDDTINLEHISLLHSLEELRLRTCEAGVLAGDLTPMASLSQLTHLSLTSIKGLGAKSVEVLGELTTLKSLELGECGDFDSTFAEAVLPKLINLQRLRLENSQVTNVCTLEILDAVARLVQLNQLELVNFDIKPGFDEKLSLCMNISKLLIIPTYISQSATTNQIVLSAVQQVSETLKVFTWCVTVELLRVTALYVDQCEESTKKEKHHFDECIPVLKPVPGATTGDEDEEETAKAKSPAVKTEDSSTATEVPQIEILPLDKVESILAENLPNTKFTIVKVPYHATCKQQLVELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01194413; iTF_01259209; iTF_01176931; iTF_01201608; iTF_01162251; iTF_00921431; iTF_00922103; iTF_01427476; iTF_00259768; iTF_00045348; iTF_00199878; iTF_00741875; iTF_01237656; iTF_01236677; iTF_01235736; iTF_01374078; iTF_00331519; iTF_00350175;
- 90% Identity
- iTF_01194413; iTF_01259209;
- 80% Identity
- -