Pter002252.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Protophormia terraenovae
Gene Symbol
MBD-R2
Assembly
GCA_951394005.1
Location
OX596073.1:55547251-55551382[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.9e-23 7e-19 68.3 0.1 4 76 421 491 418 492 0.93

Sequence Information

Coding Sequence
atGGGACGCCGGTGTTGTATTGCCGGTTGTACATCAACTTCACGCTTGCCGGAACACCATGGCGTTACTTATCATTCCTTTCCCTCTGATCAAAATGCACGCTCTATTTGGATACGCAACACTAAAATAAGCGCTAATCGCCATATAACAAAAAGTGTGTTAGTGTGTTCCAGACACTTTCGTCGAGCTGACTTTCAACCACAACGTAGTGGTAAATATTTGCTAAAGCAAAAGGTGTTTCCTACAGTATTTCCCTGGGGTAAAGTTGATGCTGCTCAAATTGAGCAAGATTTGGAATTTCTAAACTCTACAGGACCAGCAGCACCCAGTAATCTGCTAACCACCTCTTCTACAGTAGACGAAGATACCAAAGCTACAGTTGCGGCCACAGTGGCTCAGATAATGGCTCAAACTGCAGAATTAAATGCAGCAGCAGGCATTAAAGTGGAAAAATCTGAAGGAGCTTTAGAAGAAATTCTTAATGAGACGAATGCTGCAAATCCCCCTACTCCTCCAAATGTTAAATATGAAGCTGTGACCTCTTTCAATCCCGGAGCCCGCTTAGAGGCCCAAGATTTTGATGGTGTCTGGCATTCTGCACGTATCGTCGAAGTCGATAATGATGATCGTGaggttttaattaaattcgaaAAGACTGGCAAAAATAAATCCAATATGGCTGGTACAGAGGAGTGGATACCAATGAACTCCACACGTCTACGCCAGCGTATTTCGACTAAACCCATTTTGAACTTTGAATTGGAAGAGAAATGTTTGGCTCGTTGGTCGGGACCTCGCAAATTTCCTGGTACTGTTAAGAAAATTCTTCCCAATGATGTTTACGAGATTCTATTCGATGATGGTTATGTTAAGAATGTTCGTGCTATACACATGAGTAAAGTACAGCCGCCTGCAGTTTTGGAAGCAAGTGTGGTGGAAAATGTACACACTAATATAGCAGCTGTAATGCCAGTGGCTCCTGTTGTTTTAGCTTCAACAGCAACACCTTTGCCTGTAACTCCTCCGGTAGCAGCTGTGAAAAGGCCTGCTTCTGGTCAAACGTCTGGTTCTCAGCCGAAAAAACGTGCTCCAAATGGTCCGAGAAAAGATTGGCCACTATTGGATTTGTCAAAATTGAATTTGGCATCTCTTAATCTCCCCGAAATCCCCAAAGATGGAGAATGGACCTGTCATTGGGTTAACGATCAACCTATCGGTCGTGAAGGCTACTTAGTTGTTGGAGAACATCGTAAACCTACAGTCATAGTAGAAGATTGGCGTTTACCTCCCGGCTGGGTAAAACACATGTATCAACGTTCCAATGTCTTGGGAAAATGGGATGTTATACTAGTCACGCCGAATGGCAAACGTTTTAGATCAAAAGCTGATCTTAAAACTTATTTGGAAGAGCAAGGACAAGTCTATAATCCCGATGTCTATGATTTTAGCATACATCGTCGAAGAGCCAAAGATATTAATTGTTATGTATACACACCCGATTATGTACCACAACAGCCGGTGAAATCGAAACCATCACTAAATACTTCATTAGATACTAATATAGAAGCTAAAACATCCTCTATAGTAGGTACTTTACCGGCAGCAGTACCATCGCCTTATATGGAGACTCCTATAGCAGAACCCTTGCCACCCATAGAATTGTTAACCACTTCTTCAAGTAGTTTGGCGGCTGAGGATAAAAGTGTTACTCAAGTAGAAGCAGAAGTACCGAAACAACTTTTAGAATCAGCAGAAGTTAGTTCGACACCAACACCTACCTCTACGCCCACAGTGGGTTTGAAAGAAGAGGCAGTTCAGTCTTCTGATTGTGCCACACCTACGCCAGTGGTTGTACCAGTGTCGCCAGTTGTAGCAAATGTGGTTGAGCCTCCTAAGGTAGAGGATGGTTATGCTCTTATTGGTGGCTTAAAAGTTCAAATCATTGACAACCTATTTCGTTGTCCCCAAGAAGGCTGTTCTAAGAATTTCCGCAAAGAAAATCATTTGCAAATACATGTTAAACACTATCATCGCAATTTGATAAAATTACTTGGCTCCTGTCCCAAAATGCTAGAATTAGCAGAAAAACGAACTCACCCGGTGGACAATGAAGCTGCTGAACCAGTACCTAAAAATCAAATACCCAATCAACAATTCTTTGCTAAACTTCACCAACAAGACTTGGAACAAACTAGAGCCCATCGTAGATCTACAGGAGCTTTAAAGACCGCTACAGATACACCTTCAGTTGAAATTAAAACGGAACAATTAGAGGAATCAACTATCAAAGTAGAAGAAAATTTGGATAGCTCACAAAATGATACTTCAGTTAATAACACTACTGCAACATCTAGTGCAGTTTTGGAAACATCATTTGCCTCTACTAGTGCTGCAGATGATTCAGTGGCTACAGAGGGTGGTGTGGCTGAGGCTCCGTCTAATAAACGTTCTAGATTCTCACCCAATAAAAGAACCCCAGGTTCTAGAAAAAGTAATCGCCAAAGGACTACCCGTAAATATCTTACAGCAGCACAAGCAACAGCTGGTGTGGTAGCTTCAACAGCTACCGCTACGCCTATGCCAGTAGCGGCTGATTCTGGTTTTAGTGGTGTGGCTGAATTTGAGGAAACACGTCATTCCTTTAATGCTACCCCAGAAATCAATAAAGATTCGAAGAAACGTAAACCTGCATTAACTTCGAATACTCCTTTAAGTAGTGTTGATTCTCCCATAACAGCTGACTCCGGTTCCAATTCGTTCCAACCACAAAATTCCACAGAAAATGATGCCATCAATCAACCACCTCCCCAGTATATCAAGGAAAATggtgaattaattaaaattgtgcACATGCGCCAGGAAGAAATCATAAATTGTTTGTGTGGCTACTGTGAGGAGGACGGCTTAATGATACAATGTGAACTTTGCCTCTGCTGGCAGCATGGTTTATGCAATGGCATTGATAAGGTCTCAGAAGTACCCGATAAATATGTTTGCTACATTTGTCGCAATCCCCAAAGATGCCGTGATTCTTTACGCTTCAAACATGATCAAGACTGGTTGTATGAAGGCAAGCTACCAGTAGCAAATTATCATGTTTCCAATACCAACCAATTAAACAAAAGAGCTGAATATCTCAAACGTTCTCATACTCTAACTGGCAATCTATTGGAATTGAAAAACTATATGCATTCGTTGagagtaaaaattaatatagcCAATAATAAATGTCATCCCAAACTCTATCTATGGGCTAAAAAGTGGGATGAGGATGTGAAAATCAAATCTGAACCAAGTACCCCGGTGAGAATGGTGCCAAATATACCACAACCCGAAGCACCTATAGATCCTGTAGAATGTCAGCAGCGTTTAATGGAACACATTAAAATTCAGCAGGAATTAGTAATGGGTCGTTTGGGTGATATAGAAGCGGCCATAGATGTTTTGGAAAGTGAAGATGATTTGCCTGATTTGCGTGAAGACGATTTGGGTGCCACCAAAGATGTGTTGGCTGCTTTTATCAAAGAACTGGATACTGTCAAACAAATTGCCAAACTCAATTATTTGGAACACACCAAAATGGCTTATAAAAATCCAATACCACcaattaaatag
Protein Sequence
MGRRCCIAGCTSTSRLPEHHGVTYHSFPSDQNARSIWIRNTKISANRHITKSVLVCSRHFRRADFQPQRSGKYLLKQKVFPTVFPWGKVDAAQIEQDLEFLNSTGPAAPSNLLTTSSTVDEDTKATVAATVAQIMAQTAELNAAAGIKVEKSEGALEEILNETNAANPPTPPNVKYEAVTSFNPGARLEAQDFDGVWHSARIVEVDNDDREVLIKFEKTGKNKSNMAGTEEWIPMNSTRLRQRISTKPILNFELEEKCLARWSGPRKFPGTVKKILPNDVYEILFDDGYVKNVRAIHMSKVQPPAVLEASVVENVHTNIAAVMPVAPVVLASTATPLPVTPPVAAVKRPASGQTSGSQPKKRAPNGPRKDWPLLDLSKLNLASLNLPEIPKDGEWTCHWVNDQPIGREGYLVVGEHRKPTVIVEDWRLPPGWVKHMYQRSNVLGKWDVILVTPNGKRFRSKADLKTYLEEQGQVYNPDVYDFSIHRRRAKDINCYVYTPDYVPQQPVKSKPSLNTSLDTNIEAKTSSIVGTLPAAVPSPYMETPIAEPLPPIELLTTSSSSLAAEDKSVTQVEAEVPKQLLESAEVSSTPTPTSTPTVGLKEEAVQSSDCATPTPVVVPVSPVVANVVEPPKVEDGYALIGGLKVQIIDNLFRCPQEGCSKNFRKENHLQIHVKHYHRNLIKLLGSCPKMLELAEKRTHPVDNEAAEPVPKNQIPNQQFFAKLHQQDLEQTRAHRRSTGALKTATDTPSVEIKTEQLEESTIKVEENLDSSQNDTSVNNTTATSSAVLETSFASTSAADDSVATEGGVAEAPSNKRSRFSPNKRTPGSRKSNRQRTTRKYLTAAQATAGVVASTATATPMPVAADSGFSGVAEFEETRHSFNATPEINKDSKKRKPALTSNTPLSSVDSPITADSGSNSFQPQNSTENDAINQPPPQYIKENGELIKIVHMRQEEIINCLCGYCEEDGLMIQCELCLCWQHGLCNGIDKVSEVPDKYVCYICRNPQRCRDSLRFKHDQDWLYEGKLPVANYHVSNTNQLNKRAEYLKRSHTLTGNLLELKNYMHSLRVKINIANNKCHPKLYLWAKKWDEDVKIKSEPSTPVRMVPNIPQPEAPIDPVECQQRLMEHIKIQQELVMGRLGDIEAAIDVLESEDDLPDLREDDLGATKDVLAAFIKELDTVKQIAKLNYLEHTKMAYKNPIPPIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01174299;
90% Identity
iTF_01261048;
80% Identity
iTF_01261048;