Ppyg019369.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000392.1:313358-315142[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0001 2.1 8.7 0.0 24 45 313 334 307 342 0.87 2 4 4e-06 0.082 13.2 0.2 21 44 392 415 386 422 0.89 3 4 0.0051 1.1e+02 3.3 0.0 26 50 455 479 446 483 0.87 4 4 0.22 4.4e+03 -1.9 0.0 22 33 480 491 478 503 0.71
Sequence Information
- Coding Sequence
- ATGGCTCTCAGAATGCTGTTAGAAGATAATATTGAAGTTGAAAGCCCCAATCAAGAAATAGATAAATATAATTTAGTGAGAGAAAATATGACTGCTGAAAAAAATCATAATCTAATAATCTTGGGTAATAATGTATCAAATAACATTAATACAGAAAACTTCAATAATATTGACAGAACAAATAATTTAGAACTAGAAAATGACAATTTAAAGTCTAGTGTAAATTCTGAAGATACCAATTTAATAATTGATTATGTAGATAGGGAAAACAATTTAGGAGATGGTAATAATGAAGACTCTAGCAATAAATTAAACATCAACAATAAGTTGATAACAAATGACATAATACAAACAGAGGGTAGAACTATTTATAATTTGAAAATTGAAAAAAGAAATGCTGTGGAAGTCAAGCAGGTAAAGAAACAGATATTAGAGCCTGACACAGATGTGATTGTTAAAACAGATGGATCTCAAGTAATACCAAATGTGTTTGGAGATGATCGTAAAATGTTCAGAAAAAAAAAGTTTAAAAAATCTAAGCAAAAAAAGTCATCCATAAAACCGTCAAACTGCATAAAGAAACGCGTTAAGACTAAAGAAACAAGAAAAACAGACTCTTTAGAATGTTCCGTTTGTCTACAAGAATTTGGTTCGAAGATAGCGCTCCGTATCCACGTTCGTTCACACACCAAAAAGCAATACAAGTGTTCTTTATGTCACGTAAAATTCGAGACCAACTCAGATTTAGTGGCTCATAAGTCTACACACACAGATTCATTTATCTGCAATTTATGCAGACTCGCTTTCTCGGACCACTGCGATTATCTTATCCACAACTTGGCTCATACTTCTAACACAGATATCATATGCCCAGAATGTGGTTTAGGCTACAATAAAAATAGCTTCAAAGGTCATATCTACACTCATTTCGATAAAAAGATGACATGCCCTATGTGTTCTTTCGTAACTAATGGAGAAATGAATTTACGGTCTCACGTGAACAGTCACAATTATAAGTTCACTTGTGTTGAGTGTGGGAAAGTGTTGAAAAGCAAAGAGATGTACGAATACCACATGGGGATACATACAGGAGTCAAGAAGTACCAGTGTTTGTACTGCGGTAAGTGTTTCAGAAACAAATCACAAAGGCTTGTTCATACGCGCATACATACAGATGAAAAGCCGTTCACATGTGGCATTTGTAGCCAAAAATTCAGACAACATACTGATTTGAAAAGACATAAAACTTCTTGTCATGAACCAATGAAACAATTCGCTTGCAAGTACTGCGGGAAGAAGTACAGACGGAAAGTTGATATGAAGTCCCACGTGGAGACTCATGAAAATGGGAAAAAGTCTTACGAGTGCCCTGAATGTGATGCTACATACCAAACGATGCAAGGTTTAAGAAACCATACTATGTATAAACATTTGACCGAAAGGCCTGTGGAGTGTACGCTGTGTAATTCTAGATATGTTAATAATAATACTTACCGAAATCATACTAAGACTAAGATACACATGAGGAATGTTTATGGGGCGTTGTTGAAGAAGGAGAGGGGAGAAGAATGA
- Protein Sequence
- MALRMLLEDNIEVESPNQEIDKYNLVRENMTAEKNHNLIILGNNVSNNINTENFNNIDRTNNLELENDNLKSSVNSEDTNLIIDYVDRENNLGDGNNEDSSNKLNINNKLITNDIIQTEGRTIYNLKIEKRNAVEVKQVKKQILEPDTDVIVKTDGSQVIPNVFGDDRKMFRKKKFKKSKQKKSSIKPSNCIKKRVKTKETRKTDSLECSVCLQEFGSKIALRIHVRSHTKKQYKCSLCHVKFETNSDLVAHKSTHTDSFICNLCRLAFSDHCDYLIHNLAHTSNTDIICPECGLGYNKNSFKGHIYTHFDKKMTCPMCSFVTNGEMNLRSHVNSHNYKFTCVECGKVLKSKEMYEYHMGIHTGVKKYQCLYCGKCFRNKSQRLVHTRIHTDEKPFTCGICSQKFRQHTDLKRHKTSCHEPMKQFACKYCGKKYRRKVDMKSHVETHENGKKSYECPECDATYQTMQGLRNHTMYKHLTERPVECTLCNSRYVNNNTYRNHTKTKIHMRNVYGALLKKERGEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01260396;
- 90% Identity
- iTF_01260396;
- 80% Identity
- iTF_01260396;