Pazu000179.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000006.1:72316-73525[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1 9.8e+03 -3.0 0.1 58 64 13 19 11 22 0.60 2 3 3.9 7.6e+03 -2.6 0.2 7 17 138 148 133 156 0.63 3 3 3.4e-14 6.6e-11 42.4 11.2 3 69 189 255 187 256 0.96
Sequence Information
- Coding Sequence
- ATGAATTCCCCATACTCTAAAGAAATTGATTTAGTGCGGTGCTTAAAATGCGGTAAAATATTTAAATGTTCCCGTTACGATACAAAGGCATTGTTAGAGCACATATATACTGATCATCCTGAAGTTGACATTATAGATACGGATACCAAGCAGAAAAGGAACACTACAGTTGATAAAACAAAACTTCCATCTAAATCAAAACCAAATTCATATAGAAATGAATCTGTGGGTTACTCAAGGAAAACAGATGAAATTGAAAAATGTCAGTGTTCTGAAAAAGATTGTGTTTGTGAACCAAATAACAGAAATTTAAATGAAAAGACAGAGAATAAGTCACAATTGCTTAAAGATGTTGACACGACTCATTATTCTATAACTACAGAAATATTAGAAAAATATCCCGAAATAAAGGAATGTGAATATTGCCCACACAATCCAAATGCTCAAGTTGTGTATACACGTCGTTATAAATTAAGTACACCTTCAACTATATCTAAATCGGTACTACAGCGTCCCTTTCAGCGTAGTTTATATTACACTTCCATTGAGAAATGGTGTCCCACCAATGGCAAAATCCACTGTCCAAAATGTGGCTGCAATAAGCGTCCTCTGATAAAGACTAGAGTAGAACGCTTTACATATAATGAATGTGGAACCTGTTGCCTTTTAAGTTGTTGGCCATTTTGTTTTCTACCCTGGCTATGGCCGGGCCAAAGTTACGAATACTTGCACTGTGCAAATTGTAAAACATTTTTGGGTTTATATGATCGCAACACAAATTGTATAAAACCAAATCGTTTATACGTTATGATTGAAAATTGTGATAAATTTGATTATAACAATAAGAAAGAAACTAATCTGAGAAATGAATCACCATCTCCCAGCTCAGCAGATGATAGTAAAAAATCAAAAGATTTACCCTGTATTGTTGTAGATGGCAAAGAACTGCCACCAGAAACTGTGGCTCGTATACAAAAATTGAAAAAATATAGCTCTTTGGCAGGCATAGATTTGGAGGGTCTAACCAGTCGCACAGATACACCCAACTCAACAAAACGTGATGATGATTCTTATAAAGAAAAGCAAGATACAGCTCCATCTGTGAGTAATGCAAATAAAAAAATTGTTAAAGACAAATTTTGA
- Protein Sequence
- MNSPYSKEIDLVRCLKCGKIFKCSRYDTKALLEHIYTDHPEVDIIDTDTKQKRNTTVDKTKLPSKSKPNSYRNESVGYSRKTDEIEKCQCSEKDCVCEPNNRNLNEKTENKSQLLKDVDTTHYSITTEILEKYPEIKECEYCPHNPNAQVVYTRRYKLSTPSTISKSVLQRPFQRSLYYTSIEKWCPTNGKIHCPKCGCNKRPLIKTRVERFTYNECGTCCLLSCWPFCFLPWLWPGQSYEYLHCANCKTFLGLYDRNTNCIKPNRLYVMIENCDKFDYNNKKETNLRNESPSPSSADDSKKSKDLPCIVVDGKELPPETVARIQKLKKYSSLAGIDLEGLTSRTDTPNSTKRDDDSYKEKQDTAPSVSNANKKIVKDKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261567;
- 90% Identity
- -
- 80% Identity
- -