Pazu005588.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000138.1:2206086-2222431[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 2.1e+04 -17.9 23.7 41 169 65 194 20 236 0.50 2 4 0.7 1.5e+04 -4.8 4.6 39 75 320 356 265 381 0.48 3 4 7.6e-116 1.6e-111 372.6 26.2 1 299 399 695 399 696 0.93 4 4 0.076 1.6e+03 -1.7 3.7 220 245 724 749 699 770 0.47
Sequence Information
- Coding Sequence
- ATGTCAGTGGAACAAAAATTAACTGATAAAAATGTTGTGACTGCAGCAACAGCAAATACAAGTTTAACAAAAAATAATAAAAAGAACAACAATAACAACAAAAGCAATAATAACAATAATAAAAGTAGTAGTAGTAAAAAATTCATTAAAAAAGCATTGAAAAGCTCAAAAATTAAAAAGAATATTACAAACACTTCAAATGTCAACAACAATAACAACAGCAACAACAAAAATACAAGTCGTAATAATAAAAACAACAACAGCACTCCAAGTAATAGTTGTAGCAGCAGCGGCAACGACAATATTGAAGTGGCAAACGATGAAATCATCGAGGAGTTGTTTGATTTTAGCGATTCTGATTTAAAAGAACTCGACGATTCAACCAAAAACGAAGAAATTAGCAACAACATCAACTCCACTGCCAATAATGACGAATTTTTAAATGACAAAGTTAACGATAATTTAAATGAAATGAAGGATGAAGTTCCAAAAGAGTTAGAGGTGCAATTACCAGATATTTTAAATGATAATAACAATAACAATAGTCATAATAAGAACGAAGAAAAATACGAAGAACAGCAAAAACAACAGGTGGAAGAATTTTTGCCAATTGATAATATTGATAAACAAAACGAAAACAAAGCAGCGGGAGAAAGAGAAGAAAAACACAGTGAATTAGCCACGACAATGGTACTAAAAGCAGATCCAACGCCAGTCGCTACTGCGACGTCCGCTAAAACTATTACCGAAGGAAATAAAGATAATAATGAATATCATAAAAACCTACAACTGCAAGTATCAGCTAAAGAAGAACATGAAGAACAAGATACTAATAAAAATTTATTACTAAATAAAGAATTTGCTGCTAGTACTACTACTCCCGTACAAATCTCCTATAGTTCTATTGTTCAAGAAGAACAAACACCGACAACACTGATTGACAATGAAGACAACAACACAATGTCAACATCTTCAGACATAAAGTCTAAGCAAACAAATAATGATGATAGTACTCCAGTGGCAACATTTGTAAAAAATAAAGAAAGTAATCAACACGATAATGACAAAAAAAATAATGATTTAAATGATAAATCTAACGACGTTGATGATGATTATGATGATGATGAGGAGGATGAATATGCCGAACCATATAATGAACTATTAGTTCAATTCCTTGATGAATCCAATCAAATTGCTGAGGCAAGGTTAGCTGCCAGAAGGCATGCCAGAGCGGAAGCTCGTGAAATACGAATGCGAGAATTAGAACGCCAGCAAAAAGAACAAGAATCTAATGCAGATCGTGTCTTCGATATGCACTCTAACGTTACAGGCATAACACCACTGTCACATATGCGTCTGGGCTTGGGAAGTTCACCAGTTACGGGCTTACTAAATTCCACAAGAGGGAATTCTATGTCATCGAGACGTAGCAGTGAAGATTCACTAGAAGAGGAAGGCCGCAGTTTAAGGGATATACGTCATGAGTTGAAGGACGTAGAAGAACGGTTTCGCAAAGCTATGATAGCGAATGCTCAGTTAGATAATGACCGTGCCTCACAGACCTATCAAATTCAGTTGCTTAAAGATAAACTGGAAGATATGGAAGAATCATATTCACAATTACAACGTGAGTGTAAGGAAAAGTCACGCGATTGTAATGCCTTGAAACGATCATTGGATAAACTAAGCGAAGAGCTAAAACTGGTACAGGGTCAGCTAAATGAGCGTGACACACTGCTAGCAGAACAGGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAATTTACCGAAGAGAAACAACAACTGCAACATGAAGTCCAACTGTTGCAGGAACAATTAGAAACGTATAAAAGTCAGGGCAAGGGACGAGGTAAAGGCAATTCTTCAAATGGTCCTTTAGGTTCAGACGATGATGATTATGAAGCTCAAAGAGAAGCTAATAAAATCATCTCGGATTACAAATATAAATTACAAAAAGCTGAACAGGAAATTGCTAGTCTACAATCCAGTTTAGCCCGTTCGGAGACACAAGTTATACGCTATAAAAGTACCGCAGAGGCGGCCGAAAAAGCTGAGGCCGAATTGAAAATCGAAAGAAGGAAACTGCAAAGAGAGAATCGCGAGGCCATGGAAAAACTCGAAGAGTTAGAAACCTCAAATAATCATTTGCTTAAACGTTTGGATAAATTAAAGAATGCTAAAAGTGCTTTGCTCAAAGATCTCTGA
- Protein Sequence
- MSVEQKLTDKNVVTAATANTSLTKNNKKNNNNNKSNNNNNKSSSSKKFIKKALKSSKIKKNITNTSNVNNNNNSNNKNTSRNNKNNNSTPSNSCSSSGNDNIEVANDEIIEELFDFSDSDLKELDDSTKNEEISNNINSTANNDEFLNDKVNDNLNEMKDEVPKELEVQLPDILNDNNNNNSHNKNEEKYEEQQKQQVEEFLPIDNIDKQNENKAAGEREEKHSELATTMVLKADPTPVATATSAKTITEGNKDNNEYHKNLQLQVSAKEEHEEQDTNKNLLLNKEFAASTTTPVQISYSSIVQEEQTPTTLIDNEDNNTMSTSSDIKSKQTNNDDSTPVATFVKNKESNQHDNDKKNNDLNDKSNDVDDDYDDDEEDEYAEPYNELLVQFLDESNQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSNVTGITPLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKSRDCNALKRSLDKLSEELKLVQGQLNERDTLLAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFTEEKQQLQHEVQLLQEQLETYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -