Pinq024296.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47781703-47784155[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.56 3.3e+02 2.4 0.0 22 44 40 62 28 67 0.87 2 10 0.0068 4 8.6 0.4 21 44 67 90 64 100 0.86 3 10 0.24 1.4e+02 3.6 0.1 21 48 123 149 114 157 0.85 4 10 0.44 2.6e+02 2.8 0.2 21 49 179 206 166 210 0.86 5 10 0.5 2.9e+02 2.6 0.1 22 43 208 229 202 238 0.85 6 10 4.6 2.7e+03 -0.5 0.1 21 44 235 258 228 266 0.78 7 10 1.3 7.7e+02 1.3 0.1 21 43 263 285 260 291 0.85 8 10 0.064 38 5.5 0.1 21 44 291 314 288 318 0.90 9 10 0.0018 1.1 10.4 0.1 21 44 319 342 316 352 0.86 10 10 0.0011 0.63 11.2 0.1 14 45 368 399 364 406 0.86
Sequence Information
- Coding Sequence
- ATGCATTTGCGGACGTGTCTACGGATTCCTAAAACCGAAGCACTGAATCAAGACGATTCAGAATTCGAACCTCGCGCGATTTCACCCGAGCATACTTCCACACACACCGGCGATGAGAAGAAGCCCTTCAGTTGTGActtttgcgattacaaatgccgacgcTCCAAATACCTGAAAGTGCACATGCTGACGCACAGTGACGAGAAGCCGATAAGTTGTGGTCTTTGCGATTACAGATGTCGACAGTCGGCGCACTTGAAACATCACATGTTAACGCActccgacgagaagccgttcggttgtgaccactgcgattataagtgccgatTCTTGGGGGATTTGAAAAAGCACAAgctgacgcacaccgacgagaagccgttcgtatgtgatctttgcgattataaatgccgacagcttGGGAGCTTGAAGCTGCACAGATTGAGACACACGGGCgggaagccgttcggttgtgacctctgcgattacaagtgccgagAGCTCGGACGTTTGAAGAGCcacaagttaacgcacaccgagGAGAAACCGCTCGCTTGCGACCGTTGCGATTTCAAATGCCGATACACGGAAAGCCTGAGGCAGCACAAGCTGAAACACACCGACAAGAAACCGTTTagctgtgacctttgcgatttcaAGTGCCGACAACTCGGGATTTTGAAGCGGCATAagctaacgcacaccgacgagaaaccgttcagttgtgatctgtgcgattacAAATCCCGGCATTACGTTTGTTTGAAAACGCACATTTTGAAGCAcacgggcgagaagccgttcagctgtgacGCTTGCGATTTTAAGTGCCGGGAGCTTCGGCACTTGAAGTGCCAtaagttaacgcacaccgaggagaaaccgttcggttgtaaCGTCTGCAGTTACAAGTGCGGGCAGTCCCACCATTTAAAAAAGCACATGTTAACACATAGTGACGAGAAACCCGTAAGTTGTGGCCTCTGTGATTACAAGTGCCGACAGTCCTCGCATTTAAAGAAGCACATGCTGACACACACCGgggagaagccgttcggttgtgaccaATGCAATTACAAATGCCGATCGTTGGGGGATTTGAAAAAGCATAAGTTaagacacaccgacgagaagcctttCATTTGTAGTGTTTGCGACTATAAATGCCGACAGTCTGGGCAACTGAAAAACCACATGTCGAAACATGTCGAAGGAAAGCCCCTTCAGTTGTGA
- Protein Sequence
- MHLRTCLRIPKTEALNQDDSEFEPRAISPEHTSTHTGDEKKPFSCDFCDYKCRRSKYLKVHMLTHSDEKPISCGLCDYRCRQSAHLKHHMLTHSDEKPFGCDHCDYKCRFLGDLKKHKLTHTDEKPFVCDLCDYKCRQLGSLKLHRLRHTGGKPFGCDLCDYKCRELGRLKSHKLTHTEEKPLACDRCDFKCRYTESLRQHKLKHTDKKPFSCDLCDFKCRQLGILKRHKLTHTDEKPFSCDLCDYKSRHYVCLKTHILKHTGEKPFSCDACDFKCRELRHLKCHKLTHTEEKPFGCNVCSYKCGQSHHLKKHMLTHSDEKPVSCGLCDYKCRQSSHLKKHMLTHTGEKPFGCDQCNYKCRSLGDLKKHKLRHTDEKPFICSVCDYKCRQSGQLKNHMSKHVEGKPLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258587;
- 90% Identity
- iTF_01258587;
- 80% Identity
- iTF_01258587;