Basic Information

Insect: Prosopocoilus inquinatus
Gene Symbol: -
Assembly: GCA_036172665.1
Location: CM069876.1:48865190-48867201[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0016 0.95 10.6 0.0 21 51 4 34 2 36 0.87

2 17 1.2 7.4e+02 1.3 0.2 21 46 32 57 29 63 0.83

3 17 0.76 4.5e+02 2.0 0.0 21 44 60 83 57 91 0.87

4 17 0.018 10 7.3 0.4 22 47 89 114 85 119 0.85

5 17 0.0092 5.5 8.2 0.7 21 48 116 142 113 147 0.89

6 17 0.25 1.5e+02 3.6 0.1 18 44 141 167 140 171 0.88

7 17 0.077 46 5.2 0.5 21 44 172 195 169 203 0.89

8 17 5.2 3.1e+03 -0.6 0.1 23 45 209 231 200 240 0.77

9 17 0.092 55 5.0 0.3 14 48 256 289 247 294 0.85

10 17 0.16 97 4.2 0.4 22 47 292 317 288 322 0.82

11 17 0.47 2.8e+02 2.7 0.0 22 48 320 345 316 350 0.84

12 17 1.3 7.9e+02 1.2 0.1 21 43 347 369 342 375 0.83

13 17 0.35 2.1e+02 3.1 1.7 19 47 373 400 359 403 0.81

14 17 0.0068 4 8.6 0.2 21 48 403 429 400 431 0.91

15 17 0.016 9.8 7.4 2.6 7 43 417 453 415 459 0.86

16 17 0.4 2.4e+02 2.9 0.1 21 44 459 482 454 486 0.87

17 17 0.19 1.1e+02 4.0 0.1 21 43 487 509 484 513 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0016	0.95	10.6	0.0	21	51	4	34	2	36	0.87
2	17	1.2	7.4e+02	1.3	0.2	21	46	32	57	29	63	0.83
3	17	0.76	4.5e+02	2.0	0.0	21	44	60	83	57	91	0.87
4	17	0.018	10	7.3	0.4	22	47	89	114	85	119	0.85
5	17	0.0092	5.5	8.2	0.7	21	48	116	142	113	147	0.89
6	17	0.25	1.5e+02	3.6	0.1	18	44	141	167	140	171	0.88
7	17	0.077	46	5.2	0.5	21	44	172	195	169	203	0.89
8	17	5.2	3.1e+03	-0.6	0.1	23	45	209	231	200	240	0.77
9	17	0.092	55	5.0	0.3	14	48	256	289	247	294	0.85
10	17	0.16	97	4.2	0.4	22	47	292	317	288	322	0.82
11	17	0.47	2.8e+02	2.7	0.0	22	48	320	345	316	350	0.84
12	17	1.3	7.9e+02	1.2	0.1	21	43	347	369	342	375	0.83
13	17	0.35	2.1e+02	3.1	1.7	19	47	373	400	359	403	0.81
14	17	0.0068	4	8.6	0.2	21	48	403	429	400	431	0.91
15	17	0.016	9.8	7.4	2.6	7	43	417	453	415	459	0.86
16	17	0.4	2.4e+02	2.9	0.1	21	44	459	482	454	486	0.87
17	17	0.19	1.1e+02	4.0	0.1	21	43	487	509	484	513	0.89

Sequence Information

Coding Sequence: ATGCACACGGGCGAGAAGCCACACGGCTGTAACTTTTGCGATTACAAGAGCCGCCAGAACTCGGACCTCAGGCGGCACATGAcgatacacaccgacgagaagccgtttagttgcgagctttgcgattacaagtgccgaaGGATCGCGCTGCTGAACCGGCACGTGCTGATACACACCGAGGAGAAACCGTTCCGTTGCGACTTCTGCGATTTCAAGTGCCGACTGTCCGGTTACTTGAAGCAGCACTTgctgacgcacaccgacgaCAAGCCTTTCGGCTGTCGCGTCTGCGAATACAAGTGTCGCGCGGCCAGATCTCTGAAACGTCACATGCTGATACActccggcgagaagccgttccgctgcgacctttgcgattacgTGTGTCGTCACAACGCGACGCTGAACCGGCACATGTTgaggcacaccgacgagaagccgttctcctgcgatctttgcgattacaggtGCCGGCTGGCCGGGAATTTGAAAGACCACATGttgacgcacaccgacgagaaaccgttcggttgcgaCGTGTGCGAGTACAGGTGCAGGCGAGCCGGAAATCTGAGAGCTCACAACTGTCAACGGATCACCAAAAGAAAAACCGCCGCGAACAAGAAAACCGTCGAATGCCGGATATGCAATTCCAAATTCACGTCTAACACGTACCTGCGCGAGCACGTTCTGATACACatcgacgagaagccgttcgcttgCGACCTCTGCGACTACAAGGGCCGAAGGCTCGTGCACTTGAAAAAGCATAAGAAAAAAcacgccgacgagaagccgttcgcttgTTACCTCTGCGACTATAGAAGCCGCCGCATTGAGAATTTAAAACAGCACGAGTTGACACACACCGACCAGAAGCCGTACAGTTGTAACCTTTGCGATTACGAGTGTCGCGATCTCAGAAGCTTGAGACAGCACGGGCTGTTACACAGCGACAAGAAGCCGTTGGGttgcgacctctgcgattacaaatgccggcaGGCCGGAAGTTTGAAGcagcacaagttaaagcacaccggcgagaaaccgttcgccTGCGATCTTTGCGAGTATAGGTGTCGGTGCCCTGGAAATCTAAAACTGCATAAGTtgaaacacaccggcgagaggCCGCTCGCCTGTGATCTCTGCAGTTACACTTGTCGACGTCTTGGAGATTTGAGACAGCACAAGTTAAAACACGCCGaagagaagccgttcagctgtgacTTTTGTAATTTCAAGTGCCGACACGACAGAGGTTTGAAACGGCATGTGTTGAGGCAcagcgacgagaagccgttcgcttgtgatctgtgcgattataagtgccgagaGCAAAGGTATTTAAAGCGACACAGGCTGACGCACACCGAGGAGAAACCGTACGGTTGTgagctttgcgattacaaatgccgacagtACGCAGATTTGAAGGCTCACTTCTTGAAGCACACCGGCGAGATGCCTTTCGGTTGCGatgtttgcgattacaagtgccgagTGCTTCGAAGTCTGAAGCGGCACAAGAAGAAACATGAAATTTGA
Protein Sequence: MHTGEKPHGCNFCDYKSRQNSDLRRHMTIHTDEKPFSCELCDYKCRRIALLNRHVLIHTEEKPFRCDFCDFKCRLSGYLKQHLLTHTDDKPFGCRVCEYKCRAARSLKRHMLIHSGEKPFRCDLCDYVCRHNATLNRHMLRHTDEKPFSCDLCDYRCRLAGNLKDHMLTHTDEKPFGCDVCEYRCRRAGNLRAHNCQRITKRKTAANKKTVECRICNSKFTSNTYLREHVLIHIDEKPFACDLCDYKGRRLVHLKKHKKKHADEKPFACYLCDYRSRRIENLKQHELTHTDQKPYSCNLCDYECRDLRSLRQHGLLHSDKKPLGCDLCDYKCRQAGSLKQHKLKHTGEKPFACDLCEYRCRCPGNLKLHKLKHTGERPLACDLCSYTCRRLGDLRQHKLKHAEEKPFSCDFCNFKCRHDRGLKRHVLRHSDEKPFACDLCDYKCREQRYLKRHRLTHTEEKPYGCELCDYKCRQYADLKAHFLKHTGEMPFGCDVCDYKCRVLRSLKRHKKKHEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258435;
90% Identity: iTF_01258435;
80% Identity: iTF_01258435;