Pinq024434.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49556500-49560557[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.4 5e+03 -1.3 0.0 36 44 41 49 32 53 0.83 2 9 0.0033 2 9.6 0.0 21 45 56 80 50 86 0.87 3 9 0.04 24 6.1 0.1 18 52 107 141 104 142 0.92 4 9 0.27 1.6e+02 3.5 0.2 21 43 166 188 157 194 0.87 5 9 0.15 90 4.3 1.7 5 44 178 217 176 226 0.87 6 9 0.18 1.1e+02 4.0 0.0 21 51 274 304 264 306 0.89 7 9 0.0071 4.2 8.5 0.0 18 52 357 391 349 392 0.88 8 9 0.33 2e+02 3.2 0.0 24 43 419 438 408 448 0.83 9 9 0.16 92 4.2 0.1 21 48 472 499 468 500 0.93
Sequence Information
- Coding Sequence
- atgaggggaGAAACGTCAGGGGCTaggttaATTACAGAAAGCGTTGTGCCCCCAGAAGATCGCAAGGGAGTCTCGCCCGCCCCAAAAAAGCGAACGCCGGCGCCGTTTAAACGCCTCCTCGCCTCTAAAGCTTTAAGAAGACACGTGACCGCCGCCGCATGCGAAGCGGAAAACAAATTCGTGTGCGAAATCTGCGGTTACAAAACGCATAAATCCCTAAACCTGAAGCGGCACCTCGAAAAGCACGGGCGTTCGTTTCAGTGCGACCGCTGCGGCCTCAAATTAATCTCGCGCACCACTTTGAATATTCACATGAGGCGacacaccggcgaaaaaccTTACAAGTGCGGcgtttgcgattataaaagtGCCCAGTCATGTCAGCTGGCGGCGCACATGACGATACACACCGGCGCGAAGCCCTATCAATGCAGCAAATGCGACTACAGGGCCGCCTTGAGGGGCAGCATCACGAAACACATGGTGACGCATTCCGCGGAGAAGCCGTTCAAGTGCAAGATCTGCGATTTTAGGGCGAAAACGCCCAAGACTTTGAAAAGGCACCAGATCAAGCACACCGGCGAGCGCACGGTCGAATGCGTCATCTGCCGGAAGCGGTTCGCCTGTTCCACGCACCTGAAGCGTCACGTTTTGACGCACACCAACGAAAAGCCGTTCGCGTGTAACTTGTTAATCTCAAAAAGCAACGGCGCTCTCGAAGAGCTCACCGTCACCCCGAATCAGCTGTTTAAGTGTAAACGTTGCGATTTCAACTGTGACCGTCCGGACCGCATGACGGAGCATGCCTTGACGCATTCCGGCGAAAAACCCTTCGGCTGTAAGATGTGCGGCTTGAAATACAGCGCGACCAAAGGCTTAAGACATCACATGAGGCAGAAGCATTCGACGAAAGCCATTGGTCAATTCGTTTGTGAGATTTGCGGTTATGAGACGGACGAGGCGGCGTACCTCAAGAAGCACGTCAACAACACGCACGAGAAGCCGTACCAGTGCGATCGATGCGGCGACACGTTCACCGCGCTCTCCGGCCTGAAATCGCACATGATGcgacacaccggcgagaaaccgtacaAGTGCAGCCTTTGCGATTACAGAAGCATCCAGTCGTCTCAACTCTCCACGCACATGAAGCTACACACGGGCGCGAAACCTTTCCAATGCACCGAGTGCGATTACAGGGCCGCCCTCAAAGGCAACCTCACGAAGCACATGTACAAACATTACAAGGAAACTCAGTTCAAGTGTAGCATCTGCGGTGTCGGAGCGAGAAACGCGTCGGACCTAAAGAGGCACAACAtgaaacacaccggcgagaagacGGTCGAATGTGGCACGTGCGCCAAGAAATTCTCAACTTACACGCACATGAGGAGGCACGTTTTGATACAtgccggcgagaaaccgtacgCGTGTGACTTGTGCGATTACAAATCTACTCAGCGGTATAACGTGAAGGTGCACATGAAACACAGACATAAACTATAG
- Protein Sequence
- MRGETSGARLITESVVPPEDRKGVSPAPKKRTPAPFKRLLASKALRRHVTAAACEAENKFVCEICGYKTHKSLNLKRHLEKHGRSFQCDRCGLKLISRTTLNIHMRRHTGEKPYKCGVCDYKSAQSCQLAAHMTIHTGAKPYQCSKCDYRAALRGSITKHMVTHSAEKPFKCKICDFRAKTPKTLKRHQIKHTGERTVECVICRKRFACSTHLKRHVLTHTNEKPFACNLLISKSNGALEELTVTPNQLFKCKRCDFNCDRPDRMTEHALTHSGEKPFGCKMCGLKYSATKGLRHHMRQKHSTKAIGQFVCEICGYETDEAAYLKKHVNNTHEKPYQCDRCGDTFTALSGLKSHMMRHTGEKPYKCSLCDYRSIQSSQLSTHMKLHTGAKPFQCTECDYRAALKGNLTKHMYKHYKETQFKCSICGVGARNASDLKRHNMKHTGEKTVECGTCAKKFSTYTHMRRHVLIHAGEKPYACDLCDYKSTQRYNVKVHMKHRHKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258382;
- 90% Identity
- iTF_01258382;
- 80% Identity
- iTF_01258382;