Pinq024304.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47906134-47906577[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0028 1.6 9.8 0.1 21 48 6 32 3 34 0.90 2 4 0.016 9.7 7.4 0.1 18 47 31 59 29 62 0.87 3 4 0.0043 2.5 9.2 0.2 21 52 62 93 57 95 0.85 4 4 0.00082 0.48 11.5 0.2 20 46 114 140 101 143 0.88
Sequence Information
- Coding Sequence
- atgttacaacacaccggcgagaaacctttCGGCTGTgacgtttgcgattataagtgccgggGGATCAGTAATTTGAGAAAGCACAAGTTAAGGCACAccaacgagaaaccgttcagttgcgatctcTGCGATCATAAATGCCGAACATCCGGACACTTGAAACAGCACAAGCTGAAGCATACCGACGAGAAGCCTTTCGCCTGTGATCTTTGCAATTATAAGTGTCGACGCCTCGGCGATTTGAGAAGGCACAAATTGAAACGCACCGACGAGAAACCATCCAGTGTTAATCTTTGCGGTTATAAAAGCGGAAGATCGCAAGAGCACAGTTTAACGCACACCAGCGAGAAGCACTTCATCTGTGGCCTTTGCGATTTCGAGTGTCGTCAGCGTGAAACGTTGAGGCGGCATTTGTCGGTACACATGGAAGATGAAACGTCGTag
- Protein Sequence
- MLQHTGEKPFGCDVCDYKCRGISNLRKHKLRHTNEKPFSCDLCDHKCRTSGHLKQHKLKHTDEKPFACDLCNYKCRRLGDLRRHKLKRTDEKPSSVNLCGYKSGRSQEHSLTHTSEKHFICGLCDFECRQRETLRRHLSVHMEDETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258748;
- 90% Identity
- iTF_01258748;
- 80% Identity
- iTF_01258748;