Pinq024226.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:46965638-46983281[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.82 4.9e+02 1.9 0.7 26 44 26 44 16 49 0.88
2 28 0.11 68 4.7 0.4 21 47 49 75 46 80 0.84
3 28 0.11 63 4.8 0.1 21 47 77 103 72 109 0.85
4 28 0.38 2.3e+02 3.0 0.0 21 44 105 128 102 137 0.82
5 28 7.7 4.6e+03 -1.2 0.1 18 44 130 156 127 159 0.81
6 28 0.28 1.6e+02 3.4 0.2 18 43 158 183 144 190 0.77
7 28 0.16 97 4.2 0.0 21 43 217 239 211 245 0.88
8 28 3.8 2.3e+03 -0.2 0.2 21 41 245 265 242 267 0.84
9 28 4.5 2.6e+03 -0.4 0.1 22 44 297 319 289 327 0.87
10 28 1.1 6.5e+02 1.5 0.1 22 44 325 347 320 354 0.84
11 28 9.8 5.8e+03 -1.5 0.1 22 48 412 437 403 442 0.75
12 28 1.7 9.9e+02 0.9 0.3 18 44 436 462 421 466 0.78
13 28 0.08 47 5.2 0.1 21 43 496 518 481 524 0.86
14 28 0.52 3.1e+02 2.5 0.0 21 48 524 551 521 557 0.88
15 28 6.1 3.6e+03 -0.9 0.0 21 44 554 577 548 583 0.82
16 28 0.24 1.4e+02 3.6 0.3 24 44 647 667 642 672 0.86
17 28 0.008 4.8 8.3 0.1 21 44 672 695 669 700 0.91
18 28 0.055 33 5.7 0.0 21 44 700 723 697 727 0.90
19 28 0.004 2.4 9.3 0.0 21 44 729 752 725 757 0.89
20 28 0.14 81 4.4 0.1 21 44 757 780 753 788 0.86
21 28 0.47 2.8e+02 2.7 0.0 21 44 785 808 782 813 0.90
22 28 0.14 83 4.4 0.1 21 44 813 836 810 843 0.90
23 28 0.02 12 7.0 0.2 21 49 843 870 839 874 0.88
24 28 0.62 3.7e+02 2.3 0.4 18 44 868 894 867 902 0.85
25 28 9.2 5.4e+03 -1.4 0.1 26 44 904 922 896 928 0.88
26 28 0.61 3.6e+02 2.3 0.1 25 47 931 953 924 956 0.83
27 28 0.39 2.3e+02 2.9 0.5 17 44 981 1008 968 1013 0.80
28 28 0.0062 3.7 8.7 0.0 21 44 1013 1036 1010 1040 0.91

Sequence Information

Coding Sequence
ATGGTAAAAGTGTATTACCGAAACATAAGGTGTAAACGGATTTCCAAAGCCAAAACTCTAAACACAGAAAAATTCAAATGCCGAATATGCGATTATCAActtaaaaatcgtaaaactTTACGCCGCCATATTTTaatacataccggcgagaaaccgttcacttgcgacctctgcgattacaaatgccgacagcGCGAGACTTTGAAATGTCACAGGCTGCTGCACACCGACGAAAAACCGTTCAActgtgatctgtgcgattataaatgccgtcaGCTCGGACATTTGAAGCGGCACAAATTAttgcacaccgacgagaagccgttcagttgtgacatCTGCGATTATAAGGGTCGCCAGTTCGTAGATTTGAAACACCATAAACGAAGACACACCGACGacaagccgttcagttgtgatctctgcgattacaagtgccgacGTCCCGGAGGGTTGAAACAGCACATGCTAACACATAcgaacgagaagccgttcgttTGCGACacctgcgattacaagtgccggcAGCTCAAAGATCTGAAACATCATAAGTTAACGCACACCAACGAgatgccgttcagttgtgatctttgcgattataagtgcctgCGGCTCGAAAGTTTCAAATGTCACAAGCTGAAacacaccaacgagaaaccGTTGAGTTGCGATATGTGCGATTATAAAAGCCGATGGCTGCGAGATCTGCGAAAGCACAAGTTAACACACACCAACGAATATCCGTACAGTTGCGacatttgcgattataaatgccgacataGCGGAAGCATGAGGTACGAATGGTTTTCCGGAAATAAAACCGAGGACCTCGAGGCAATTTGCGATTCCAAAGCGGATTTACGCAAGCACGTGCTGAAACACACCGGCCAAAAGCCGTTCCGATGCGCCGTTTGCGACCGTAAATTCGACGAAGTCCGAAGATTGAGGGGGCACGTGTCGACGCACGccggcgaaaaaaaattcggCTGTGAAATTTGCGACTACGAATGCCAACAGTCCGAATTACTGACGCGGCACGTGTTAACGCACGAGCCgaagcacaccggcgagaagctaTTCCGTTGTGTGCTCTGCGATCTTAAATTTGAAGACATCGAAGAATTGAGTCAGCACGTGTCCGGACACATCCGAGACAAGTTCGGGTGTGACCTGTGCGACTACAAATGCCGAACGACCGAGGTTCTAAAACAGCACGTGTCGTCACACACCGGCAGGAAGCCCTTCGCTTGCAACCTGTGCGATCACAAATGTCGAACCAAATCGCAATTGAATCAGCACAAGTTGAAACATACCAGCGAGAAGCCTTACAGTTGTgaactttgcgattataaaggtCGACGGCGTGCGCATTTGAAGTGGCACATGTTGAAACATACAGATGGAGGGAGGTCGTTTAACTGTGACTTTTGTGACTACACGAGCCGACGGCCCGGAGATGTGAAACGTCACCTGGTGGTGCACACTAAAGAAAGGCCTTTCACTTGCGATATATGCAACCATGCAAGCCGAGATGCTTCAGCTTTGAAAATGCATAAGCTGACAcataccgacgagaagccgtttaactgcgacctctgcgattacaagGGTCGGCGATCCGCGTCACTGAAGCAGCACATGGTGAAAATGCACATCggcggcgagaagccgttcagctgcgacctttgcgattatagatTCCGTTACGCCTCTGTTTTGAAGAGTCACATGCTGACGCACACCAACAAAAGATTCAAGTGGGACGGGCTTGCGTACGAGTGCCACCTTTGCGGCTCTAAACTCCAATCGCAAGGTTGCTTGCGCAAGCACATGCTGCgacataccggcgagaagctATTCCGCTGCGccgtttgcgattacaaattcCAGGACATCGAGAAACTGAAACGACACGTGACCACCCACATCGGCGAAAAGAAATTCGGCTGCCAACTGTGCAGCTACAAATGCCGGCAATCCGAGCTGTTAAAGCGACACGTActgacgcacaccggcgaaaagccCTTCAATTGCAcactctgcgattacaaatgccgacaaCCCGGAAACCTAAAGCGCCACGTgctgacgcacaccgacgagaaaccgttcggttgcgacctctgcgattacaaatgccggcaAACCGAGTTTCTAAAGCGGCAcatgttaatacacaccggcggcgagaaaccgttcagctgcaccttctgcgattacaagtgccgaaAATCCGGCAACTTGAAGCGCCACGTCCtgaagcacaccgacgagaagccgttcacttGCGACCTCTGCGACTACAAATGCCGGCAGCTCACCTATTTAAAACAGCACACGCTCACGCACACCGAGGAGAAGCCGCTAAGctgcgacctctgcgattataaatgtcggcaAGTCGGGAAATTGAAGCTGCACCTGCTAAcccacaccgacgagaagcccttcagctgtgacctttgcgattataagagTCGGCAGCGCGCGGTGCTCAAACGGCACATGCTGACGCACGCCACGggcggcgagaagccgttcaattGTAATttctgcgattacaagtgcctgCAGGCGGTAAACTTGAAGCGTCACATGCTgaggcacaccggcgagaaacccttcagttgcgatctttgcaGCTACAGATGCCGCCAGTTCATATCTTTAAAACAACACACGCTGACGCACACCGACAAGAAGCTCTTCAGCTGTGATCTCTGCGAGTACAAGTGCCGAAAAGCCGATTCGTTAAAGCGGCACTGCTTAActcacaccgacgagaaacttTACAGTTGCGGACTTTGCGATTATAAGAGTCGACAGCTGGCCGTGTTGAGACGGCACATGTCGGAAGCGCACGCGGACGGCGAGAAAACCTTCAGCTGTAACTTGTGCGATTACAGGAGCCAATGGCCCGTCGACATAAAGCGTCACGTGTTgagacacaccggcgagaaaccggtCAGTTGCGGGTCTTGCAGTTACAAGTGCGTGCAACCCTCTCAGCTGAAACGGCACatgttaacgcacaccgacgagaagccgttcagctgcaGTACTTGCGATTATAAATTCCGAAGTTCCAGCAATTTGAAGCGACACATGTTAACACACCGATGA
Protein Sequence
MVKVYYRNIRCKRISKAKTLNTEKFKCRICDYQLKNRKTLRRHILIHTGEKPFTCDLCDYKCRQRETLKCHRLLHTDEKPFNCDLCDYKCRQLGHLKRHKLLHTDEKPFSCDICDYKGRQFVDLKHHKRRHTDDKPFSCDLCDYKCRRPGGLKQHMLTHTNEKPFVCDTCDYKCRQLKDLKHHKLTHTNEMPFSCDLCDYKCLRLESFKCHKLKHTNEKPLSCDMCDYKSRWLRDLRKHKLTHTNEYPYSCDICDYKCRHSGSMRYEWFSGNKTEDLEAICDSKADLRKHVLKHTGQKPFRCAVCDRKFDEVRRLRGHVSTHAGEKKFGCEICDYECQQSELLTRHVLTHEPKHTGEKLFRCVLCDLKFEDIEELSQHVSGHIRDKFGCDLCDYKCRTTEVLKQHVSSHTGRKPFACNLCDHKCRTKSQLNQHKLKHTSEKPYSCELCDYKGRRRAHLKWHMLKHTDGGRSFNCDFCDYTSRRPGDVKRHLVVHTKERPFTCDICNHASRDASALKMHKLTHTDEKPFNCDLCDYKGRRSASLKQHMVKMHIGGEKPFSCDLCDYRFRYASVLKSHMLTHTNKRFKWDGLAYECHLCGSKLQSQGCLRKHMLRHTGEKLFRCAVCDYKFQDIEKLKRHVTTHIGEKKFGCQLCSYKCRQSELLKRHVLTHTGEKPFNCTLCDYKCRQPGNLKRHVLTHTDEKPFGCDLCDYKCRQTEFLKRHMLIHTGGEKPFSCTFCDYKCRKSGNLKRHVLKHTDEKPFTCDLCDYKCRQLTYLKQHTLTHTEEKPLSCDLCDYKCRQVGKLKLHLLTHTDEKPFSCDLCDYKSRQRAVLKRHMLTHATGGEKPFNCNFCDYKCLQAVNLKRHMLRHTGEKPFSCDLCSYRCRQFISLKQHTLTHTDKKLFSCDLCEYKCRKADSLKRHCLTHTDEKLYSCGLCDYKSRQLAVLRRHMSEAHADGEKTFSCNLCDYRSQWPVDIKRHVLRHTGEKPVSCGSCSYKCVQPSQLKRHMLTHTDEKPFSCSTCDYKFRSSSNLKRHMLTHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01258294;
90% Identity
iTF_01258294;
80% Identity
iTF_01258294;