Basic Information

Insect: Prosopocoilus inquinatus
Gene Symbol: -
Assembly: GCA_036172665.1
Location: CM069876.1:45135573-45140174[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8 1.7e+03 0.2 0.1 25 47 42 64 37 70 0.79

2 15 0.63 3.7e+02 2.3 0.0 21 44 66 89 62 96 0.86

3 15 0.12 71 4.6 0.2 26 48 98 119 92 125 0.86

4 15 7.1 4.2e+03 -1.1 0.1 18 32 118 132 116 139 0.76

5 15 0.7 4.2e+02 2.1 0.0 25 46 148 169 132 175 0.80

6 15 0.00037 0.22 12.6 0.1 21 48 172 198 169 202 0.90

7 15 2 1.2e+03 0.7 0.3 24 44 204 224 195 228 0.77

8 15 0.00047 0.28 12.3 0.0 21 47 229 255 225 261 0.86

9 15 3.2 1.9e+03 0.0 0.0 22 44 258 280 255 283 0.87

10 15 2.1 1.2e+03 0.6 0.1 18 44 309 335 305 339 0.83

11 15 1.9e-06 0.0011 19.9 0.3 20 47 339 366 336 373 0.87

12 15 6.8 4e+03 -1.0 0.0 22 43 369 390 365 397 0.67

13 15 4.9 2.9e+03 -0.6 0.1 25 48 427 450 420 456 0.72

14 15 2.3 1.3e+03 0.5 0.1 21 45 451 475 448 482 0.78

15 15 0.0082 4.9 8.3 0.6 21 48 479 505 476 509 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8	1.7e+03	0.2	0.1	25	47	42	64	37	70	0.79
2	15	0.63	3.7e+02	2.3	0.0	21	44	66	89	62	96	0.86
3	15	0.12	71	4.6	0.2	26	48	98	119	92	125	0.86
4	15	7.1	4.2e+03	-1.1	0.1	18	32	118	132	116	139	0.76
5	15	0.7	4.2e+02	2.1	0.0	25	46	148	169	132	175	0.80
6	15	0.00037	0.22	12.6	0.1	21	48	172	198	169	202	0.90
7	15	2	1.2e+03	0.7	0.3	24	44	204	224	195	228	0.77
8	15	0.00047	0.28	12.3	0.0	21	47	229	255	225	261	0.86
9	15	3.2	1.9e+03	0.0	0.0	22	44	258	280	255	283	0.87
10	15	2.1	1.2e+03	0.6	0.1	18	44	309	335	305	339	0.83
11	15	1.9e-06	0.0011	19.9	0.3	20	47	339	366	336	373	0.87
12	15	6.8	4e+03	-1.0	0.0	22	43	369	390	365	397	0.67
13	15	4.9	2.9e+03	-0.6	0.1	25	48	427	450	420	456	0.72
14	15	2.3	1.3e+03	0.5	0.1	21	45	451	475	448	482	0.78
15	15	0.0082	4.9	8.3	0.6	21	48	479	505	476	509	0.91

Sequence Information

Coding Sequence: ATGAAGATGCACAAACTAAAACACAGCCACGAGAAGCGCTTCAGCTGCGGGATTTGCGGTAACAAATTCAAGCGACTCGAGTATCTGAGACTCCACATgttgatacacaccggcgagaagcgttttggttgcgatctttgcgattaccaGTGTCGACAGATCACGCATTTGAAACATCACATgttgatacacaccggcgagaagccgttcgcttgcgatctttgcgattacaagtgccgagAGAAGTCAAAGCTGAAGCAGCACATGTTGACGCACGCCGGAAAGACGTTGAGCTGCgacgtttgcgattataaaagtCGATATTCCTCCAATTTGAGGCTGCACAAGTTAAGGcacgccgacgagaagccgttcggttgtagCGTTTGCGAATACAAgtGTAAACAGGCTCCTGAATCTGACCTTGAGGACAAAGGAAAAATCATTTGCCGCATATGTGATTCCACATTTACCACAAAAGGAAATTTGAGGTCACACGTGCTgatacataccggcgagaaaccgttcggttgtgatatTTGCGACTACAAATGTCGACAGTCCTCCAATCTGAAGCTGCACAAGTTAAGGCACACCAACGAACAAAAGCAGTACAGTTGCGCCCTTTGCGAATACAAATGCCTCCAGTCATCGCAACTAAAAGAGCACTTATTAGCACACAACAACGAAAACCCGTTCACCTGCGGGATTTGCGGAAAGAAATTCAGACGACTCGGCAACTTCAGGCGACACGTGTTAATACACACCGATgaaaagccgttcagttgcgatttTTGTGATTACAAATCCAGACACAACCAGCATTTGAAAGAGCACATGATCATACACACCGGAGAGACGCTGAGCTGTGACGTGTGCGATTTCAAAACTTCCCGTTCCGACACCATGAAACTGCACAAATTAAGGCATACCAACGAGAAGcggttcagttgtgatctctgcgaatACAGATGTCTCGAATCGTCAGATTTAAAACGGCACATGCCAACACACAACAGCGACAAGCCGTTCGCGTGTGAAATTTGTTACAAGAGATTCAAACAACTCAGGCACTTGAGACGCCACATGTTAATACACGCCGACgaaaagccgttcagttgcgacgtttgcgattacaagtgcggCGGCAATTCAAGGTTGAAACAGCACATGTTAACGCATACGGAAAAGTCGATGAGCTGCGACGCCTGCGATTACAAGACTGGACGTTCAGACAGCATGAAGctgcacaagttaaagcacgcCGAGGAGAAGCGGTTCGGTTGCACTCTTTGCGAATACAGGTGTCTCGTGTCATCAAAACTAAAACGGCACATGTTAATACACAACGACGAAAAGCCGTTCACCTGCGGAACTTGCGGCAGGAAGTTCAAGCGACGCGAATACTTGAAGTGCCACATGTTGATgcacaccggcgaaaagccgTACAGTTGCAATCGCTGTGATTACGTGTGTCGAGATACCGCAAAGTTGAAGCGACACATTTTGAGACACTCTGGCGAAAAGCGATCTTTGCAATTGCAAGAGCCGATGGCAACAAAGTTTGAAGCTGCGGATTAG
Protein Sequence: MKMHKLKHSHEKRFSCGICGNKFKRLEYLRLHMLIHTGEKRFGCDLCDYQCRQITHLKHHMLIHTGEKPFACDLCDYKCREKSKLKQHMLTHAGKTLSCDVCDYKSRYSSNLRLHKLRHADEKPFGCSVCEYKCKQAPESDLEDKGKIICRICDSTFTTKGNLRSHVLIHTGEKPFGCDICDYKCRQSSNLKLHKLRHTNEQKQYSCALCEYKCLQSSQLKEHLLAHNNENPFTCGICGKKFRRLGNFRRHVLIHTDEKPFSCDFCDYKSRHNQHLKEHMIIHTGETLSCDVCDFKTSRSDTMKLHKLRHTNEKRFSCDLCEYRCLESSDLKRHMPTHNSDKPFACEICYKRFKQLRHLRRHMLIHADEKPFSCDVCDYKCGGNSRLKQHMLTHTEKSMSCDACDYKTGRSDSMKLHKLKHAEEKRFGCTLCEYRCLVSSKLKRHMLIHNDEKPFTCGTCGRKFKRREYLKCHMLMHTGEKPYSCNRCDYVCRDTAKLKRHILRHSGEKRSLQLQEPMATKFEAAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258383;
90% Identity: iTF_01258383;
80% Identity: iTF_01258383;