Basic Information

Insect: Prosopocoilus inquinatus
Gene Symbol: -
Assembly: GCA_036172665.1
Location: CM069876.1:47303371-47306771[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.35 2.1e+02 3.1 0.0 21 43 51 73 47 82 0.87

2 16 0.1 59 4.8 1.7 22 49 80 111 77 116 0.75

3 16 5 3e+03 -0.6 0.1 26 44 112 130 106 136 0.84

4 16 0.29 1.7e+02 3.4 0.0 21 43 136 158 131 163 0.85

5 16 0.002 1.2 10.3 0.3 21 44 164 187 159 192 0.89

6 16 0.0012 0.7 11.0 0.2 21 44 192 215 189 220 0.89

7 16 0.071 42 5.3 0.1 21 44 220 243 215 247 0.91

8 16 0.14 81 4.4 0.0 21 43 248 270 245 280 0.85

9 16 0.88 5.2e+02 1.8 0.1 21 43 310 332 308 337 0.88

10 16 0.27 1.6e+02 3.5 0.1 21 48 338 364 333 369 0.87

11 16 0.9 5.3e+02 1.8 0.2 21 44 366 389 363 399 0.84

12 16 0.0046 2.7 9.1 0.2 19 48 420 448 414 455 0.85

13 16 8.3 4.9e+03 -1.3 0.0 21 43 450 472 445 477 0.73

14 16 0.034 20 6.4 0.2 20 44 477 501 462 509 0.85

15 16 0.028 17 6.6 0.2 21 48 506 532 503 534 0.90

16 16 0.18 1.1e+02 4.0 2.7 16 44 529 557 527 566 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.35	2.1e+02	3.1	0.0	21	43	51	73	47	82	0.87
2	16	0.1	59	4.8	1.7	22	49	80	111	77	116	0.75
3	16	5	3e+03	-0.6	0.1	26	44	112	130	106	136	0.84
4	16	0.29	1.7e+02	3.4	0.0	21	43	136	158	131	163	0.85
5	16	0.002	1.2	10.3	0.3	21	44	164	187	159	192	0.89
6	16	0.0012	0.7	11.0	0.2	21	44	192	215	189	220	0.89
7	16	0.071	42	5.3	0.1	21	44	220	243	215	247	0.91
8	16	0.14	81	4.4	0.0	21	43	248	270	245	280	0.85
9	16	0.88	5.2e+02	1.8	0.1	21	43	310	332	308	337	0.88
10	16	0.27	1.6e+02	3.5	0.1	21	48	338	364	333	369	0.87
11	16	0.9	5.3e+02	1.8	0.2	21	44	366	389	363	399	0.84
12	16	0.0046	2.7	9.1	0.2	19	48	420	448	414	455	0.85
13	16	8.3	4.9e+03	-1.3	0.0	21	43	450	472	445	477	0.73
14	16	0.034	20	6.4	0.2	20	44	477	501	462	509	0.85
15	16	0.028	17	6.6	0.2	21	48	506	532	503	534	0.90
16	16	0.18	1.1e+02	4.0	2.7	16	44	529	557	527	566	0.85

Sequence Information

Coding Sequence: ATGCGCGGAAGTTTTAAAAAGACTCTTTTTTTCAGGCTCGAATGGATTCCGAAATATAAAACTGTCGAAGGAAAGACGTTCGAATGTGGTATATGTGGACTGAAGCTTGCTTCTCGTGCATCACTGCGACATCATGTTTTGATACACACCggtgagaaaccgttcggttgtgatctctgcgcTTACAAGTGCAGGGAAATTGGAAACTTGAAGAAGCACAAgctgacgcacaccgacgaCAAGCCTTTCAgttgcgatctctgcgattacacGTGCCGAGAAATTAGACAACTGAACCGGCACCGGTTAAAGCACACCGACGCGAAGCACTTCgcttgtgacctttgcgatcaCAAGTGCAGGGATGTCGGACACTTGAAAAGGCACATTCTAACGCACGCCGCCGGCGAGAAGCCATTCAGTTGTGACGTATGCGATTACAAAAGTCGGAAATTTTTCAACTTGAAGCAGCACAAGTTAAAGCATACCGACGAGaggccgttcagttgtgatttatgcgattataaatgccggcagAGCTCGCATTTGAAAAGGCACGTCTTAatgcacaccgacgagaagccgtacaattgtgatctgtgcgattataaatgccgacaggtCGGGAACTTGAGAAGGCACAAGTTGatgcacaccgacgagaagccgtacaGATGTAATCTTTGCGATTTGGAATGCCGACAAATCGGTGACCTGAAAAGGCACgtgttaacgcacaccgacgagaagccgttcagttgtgacctttgcgggTACAAATGCCGACAAATTGGAAACTTGAAGATCCACAAGCTTGAATGGATTTCGAAAGCTAAAACCGTCAagggaaagacgttcgaatGTCGGATATgtgatactaaattttcatccCGTCAATCTTTGCTAACTCACATTTTGATACACACcggtgagaagccgttcagttgtgacctttgcgaatACAAATGCCGAGAGAGCAGTGCGTTGAAGTTAcacaagttaacgcacaccggcgagaagccgttcagttgtgatctatGCGATTACACTTGCCGATGCTTAAAAGACTTGAAATCGCACTTGCTGAAGCActccgacgagaaaccgttcaggtGTAACCTATGCGATTATAAATCCCGAAGGATTAACACGTTGAAACGGCACAagctaacgcacaccgacgagaaaccgttcagctgtgatCTATGCGATTATAAATCTCGACTAATCGGACAGCTGAATCAGCACAAGTTACAGCACAAgagcgagaagccgttcagctgcgatctttgcgattacaagtgccgacaAGTTAGATACTTGAACacgcacaagttaaagcacaccaacgagaagccgttcagctgtgatctATGCGATTTCAAGTGCCGACACATCGGAAGCTTGAACACGCACAAGTtgaagcacaccgacgagaaaccgtacaGATGTAATCTCTGCGATTTGGAATGCCGACAAATCGGTGACCTGAAAAGGCACgtgttaacgcacaccgacgagaagccgttcagttgtgacctttgcgagtACAAATGCCGGCAAATTGGAAACTTGAAGAGCCACAGGTTaagacacaccgacgagaagccgttcagttgtaatCTGTGCGAGTATAAATGCCGACGCAGGACGAGCTTAAAAAGGCACAAGTTAAGAGAacacaccgatgagaagccgATGTGA
Protein Sequence: MRGSFKKTLFFRLEWIPKYKTVEGKTFECGICGLKLASRASLRHHVLIHTGEKPFGCDLCAYKCREIGNLKKHKLTHTDDKPFSCDLCDYTCREIRQLNRHRLKHTDAKHFACDLCDHKCRDVGHLKRHILTHAAGEKPFSCDVCDYKSRKFFNLKQHKLKHTDERPFSCDLCDYKCRQSSHLKRHVLMHTDEKPYNCDLCDYKCRQVGNLRRHKLMHTDEKPYRCNLCDLECRQIGDLKRHVLTHTDEKPFSCDLCGYKCRQIGNLKIHKLEWISKAKTVKGKTFECRICDTKFSSRQSLLTHILIHTGEKPFSCDLCEYKCRESSALKLHKLTHTGEKPFSCDLCDYTCRCLKDLKSHLLKHSDEKPFRCNLCDYKSRRINTLKRHKLTHTDEKPFSCDLCDYKSRLIGQLNQHKLQHKSEKPFSCDLCDYKCRQVRYLNTHKLKHTNEKPFSCDLCDFKCRHIGSLNTHKLKHTDEKPYRCNLCDLECRQIGDLKRHVLTHTDEKPFSCDLCEYKCRQIGNLKSHRLRHTDEKPFSCNLCEYKCRRRTSLKRHKLREHTDEKPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258407;
90% Identity: iTF_01258407;
80% Identity: iTF_01258407;