Pinq024101.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:45044697-45046482[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.44 2.6e+02 2.8 0.0 23 45 42 64 29 71 0.73 2 15 0.06 35 5.6 0.1 21 43 68 90 65 96 0.89 3 15 4.8 2.9e+03 -0.5 0.3 24 44 99 119 93 126 0.76 4 15 0.16 94 4.2 0.1 21 38 124 141 120 152 0.79 5 15 2.6 1.5e+03 0.3 0.0 21 44 149 172 146 176 0.86 6 15 0.0064 3.8 8.7 0.4 20 44 176 200 169 205 0.88 7 15 1.6 9.7e+02 1.0 0.2 16 44 227 255 214 259 0.77 8 15 0.0058 3.4 8.8 0.0 21 44 260 283 257 291 0.86 9 15 0.16 96 4.2 0.0 21 44 288 311 286 316 0.89 10 15 0.0061 3.6 8.7 0.0 21 47 316 342 313 348 0.85 11 15 0.31 1.9e+02 3.2 0.0 21 45 344 368 342 376 0.85 12 15 1.4 8.4e+02 1.2 0.0 21 44 372 395 370 400 0.88 13 15 0.075 45 5.2 0.0 21 47 400 426 397 431 0.86 14 15 0.21 1.2e+02 3.8 0.1 21 51 428 458 426 461 0.87 15 15 4.7 2.8e+03 -0.5 0.1 21 43 456 478 448 484 0.81
Sequence Information
- Coding Sequence
- ATGCGAAAAAATCCTGTTTTAGCAAGAACAGCTACTTTAGCCATAACCTCTTTTTATCAGGCCGTAACACTCAACATCGCAGACGCGTGCAAGCGGACTTCCGATTCTAAACTCGAGGAGAAGGGAAAAGCGACATGCCGCATATgtgattcgaaattttcaagtAAAGCGTACTTGAAGAAACACGTgctgatacacaccggcgagaaaccgttcaattgtgatctttgcgattacaaatgtcgaCAGTCGTCCAGCCTGAAGGCGCAcaaattaacgcacaccgacgagaagcagTTCCGTTGCACGCTCTGCGAATACAAATGCCTCAGAGCATCACAATTGAAACGGCACGTGCTGACGCACAACAACGAAAAGCAGTTCACCTGCGAAATCTGCAAGAAGAAAGTCAGACAGCTGCGACCCCACATgttaatacacaccgacgaaaaaccgttcagttgcggcctttgcgattacaagtgtcgAGACGGTACGATGTTGAAACAGCACACGTcgatacacaccggcgaaaagccAATCACttgcgatctctgcgattacaaatgccggcaATACCAACGCCTGAAGCAGCACATGTTGACACACGCCGGAAACTCGCTGAGCTGCGACGTTTGCGCTTACAAATGCGAACGTCCCGACGCCATGAAGACGCACAAATTAAGACACACCGACGAAAAGCGCTTCAGATGTACTATTTGCGGATACAAATCTCTGGAATCAGCGCCATTAAAACGGCACATGTTGATACACAACGACGAAAAGCCGTTCACCTGTGACGTTTGCGATAAGAAATTCAGACAGCTCGCTCACCTGCGGACTCACAAGTTGATACACACGGGCGAAAAGCCGTTCggctgcgatctttgcgatttcaCGTGCCGCGGAACCTCAGCGCTGAAACGCCACGTGTtgaaacacaccggcgagaagcctttcacttgcgatctttgcgactACAAGTGCCGAGACAGCACGACTTTAAAATACCACTTgctaatacacaccggcgaaaaaccGTTCGCTTGCGAACTTTGCGATTTCACGTGCCGCGGGATCACGTCGTTGAAACGCCACACGTTAATACACACGGGCGAGAAGCCTTTCGACTGCGATCTTTGCGACTTCAAGTGCCGTGATGCCTCGACGTTGAAACACCACATGTTAGTACAcacgggcgagaagccgttcggctgcgacctttgcgatttcACGTGCCGGGGGACGACGTCGTTGAAACGCCAcatgttaatacacaccggcgagaagccgttcagttgcgatctttgcgattacaagtgccgcgAGGCCTCGACGTTAAAACACCATATGCgaatacacaccggcgaaaagccgttcgattgcgatctttgcgattataagtgccgacaTTACCAGAGCTTGAAGctgcacaagttaaagcacgcCGGAAACTCAACCGGAACTGATTGA
- Protein Sequence
- MRKNPVLARTATLAITSFYQAVTLNIADACKRTSDSKLEEKGKATCRICDSKFSSKAYLKKHVLIHTGEKPFNCDLCDYKCRQSSSLKAHKLTHTDEKQFRCTLCEYKCLRASQLKRHVLTHNNEKQFTCEICKKKVRQLRPHMLIHTDEKPFSCGLCDYKCRDGTMLKQHTSIHTGEKPITCDLCDYKCRQYQRLKQHMLTHAGNSLSCDVCAYKCERPDAMKTHKLRHTDEKRFRCTICGYKSLESAPLKRHMLIHNDEKPFTCDVCDKKFRQLAHLRTHKLIHTGEKPFGCDLCDFTCRGTSALKRHVLKHTGEKPFTCDLCDYKCRDSTTLKYHLLIHTGEKPFACELCDFTCRGITSLKRHTLIHTGEKPFDCDLCDFKCRDASTLKHHMLVHTGEKPFGCDLCDFTCRGTTSLKRHMLIHTGEKPFSCDLCDYKCREASTLKHHMRIHTGEKPFDCDLCDYKCRHYQSLKLHKLKHAGNSTGTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258445;
- 90% Identity
- iTF_01258445;
- 80% Identity
- iTF_01258445;