Pinq024457.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49696252-49697526[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.26 1.6e+02 3.5 0.1 21 52 28 59 17 61 0.86 2 12 0.029 17 6.5 0.5 22 44 57 79 53 89 0.84 3 12 5 3e+03 -0.6 0.0 21 46 84 109 79 115 0.78 4 12 0.14 86 4.3 0.1 22 48 113 138 109 140 0.86 5 12 0.0048 2.9 9.1 0.0 21 48 140 167 135 171 0.83 6 12 0.0075 4.5 8.4 0.2 20 44 167 191 164 199 0.87 7 12 0.53 3.1e+02 2.5 0.1 21 43 196 218 192 224 0.87 8 12 0.097 58 4.9 0.1 21 44 224 247 219 255 0.86 9 12 0.31 1.8e+02 3.3 0.0 21 47 252 278 250 285 0.84 10 12 0.0095 5.6 8.1 0.0 21 43 308 330 305 336 0.91 11 12 0.2 1.2e+02 3.9 0.0 21 44 336 359 332 369 0.86 12 12 0.00071 0.42 11.7 0.2 21 51 392 421 388 423 0.90
Sequence Information
- Coding Sequence
- ATGTTCTCGAAAGCCAAAATTGCAAAGGACGAAATATTCCAAGCGTGTTCAAATTCACGCAAGTACATTCTCACGCGcaccgacgagaagccattCAGTTGtaacctttgcgattacaaatgccggcGCGTCGGCGACTTAAATCAGCACAGTTTACGACACACCGACgcgaagccgttcagttgtgatcaatgcgattacaaatgccgacagtTCAAAGACTTGCGACGGCACCAGGTgaagcacaccggcgagaagccgtttcTCTGCGGACTATGCGACTATAAATGCCGAGGGGTCGGCCGATTAAAAAGCCACATGCTAATTCACACCGGCCAGAAGCCGTTGAGTTGCGACCTCTGCGACTATAAGTGCCGACTTTACGAGAACTTGAAGCGGCACAAGCtgaaacacaccggcgagacCCCGTTCACCTGTGATCTTTGCGAATACAAGTGCCTGCAAGCGTCGAACTTAAAAAAACACATGCTAATTCACAccagcgagaagccgttcggctgtgacctttgcgattataaatgccggcacGCTTCGCACCTGAGACGGCACAAgttaatacacaccgacgagaagccgttctgctgcgatctctgcgattataaatgccggcagGTTGGACAGTTGAAAGATCACAAGCTGGAGCACACGGGCGAAAAGCCGTTCatttgcgatctttgcgatttcaGAAGCCGAAAGGTTTCGCACTTACGACGGCACAAgctgatacacaccggcgagaagccgtacagttgtgatctctgcgattacaaatgccgacaggTTGGACAGCTGAAAGATCACAAGTCGGTGCACACGGGCGAGAAGCccttcggttgtgatctttgcgattttaaatgtctGCGGGTCGGACAGTTGAAAGGTCACATGTTCATACACACaagcgagaagccgttcggttgtgacctgtgcgattataagtgccgagTATCTAACGACTTGAAGAGgcacaagttaacgcacacggacgagaagccgttcggttgtgatctttgcgattataagtgccgggTCGCCGGAAACTTAAAGAAGCACAGGTTAACACACACCAATGAGAAGCCGTTCTTCTGtggtctttgcgattataagttcCAGCGGATTGGACAGTTGAAAGCTCACATGTTGATACACACGAACGAGAAGCCGTTGAGTTGTGAACTCTgtgattacaaatgccgacaaTCTCATGATTTGAAGAAGCACAAGTTGAAGCACGTCAGTAAGAAGCCGCTGTGA
- Protein Sequence
- MFSKAKIAKDEIFQACSNSRKYILTRTDEKPFSCNLCDYKCRRVGDLNQHSLRHTDAKPFSCDQCDYKCRQFKDLRRHQVKHTGEKPFLCGLCDYKCRGVGRLKSHMLIHTGQKPLSCDLCDYKCRLYENLKRHKLKHTGETPFTCDLCEYKCLQASNLKKHMLIHTSEKPFGCDLCDYKCRHASHLRRHKLIHTDEKPFCCDLCDYKCRQVGQLKDHKLEHTGEKPFICDLCDFRSRKVSHLRRHKLIHTGEKPYSCDLCDYKCRQVGQLKDHKSVHTGEKPFGCDLCDFKCLRVGQLKGHMFIHTSEKPFGCDLCDYKCRVSNDLKRHKLTHTDEKPFGCDLCDYKCRVAGNLKKHRLTHTNEKPFFCGLCDYKFQRIGQLKAHMLIHTNEKPLSCELCDYKCRQSHDLKKHKLKHVSKKPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258537;
- 90% Identity
- iTF_01258537;
- 80% Identity
- iTF_01258537;