Pinq024299.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- ehn-3
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47798482-47806132[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0077 4.6 8.4 1.0 21 43 6 28 1 33 0.83 2 21 0.0057 3.3 8.8 1.0 21 48 34 60 30 66 0.89 3 21 3.1 1.8e+03 0.1 0.1 17 43 58 84 57 88 0.80 4 21 0.33 2e+02 3.2 0.0 21 43 90 112 82 121 0.86 5 21 1.2 7e+02 1.4 0.2 21 43 118 140 112 145 0.86 6 21 0.034 20 6.3 0.2 21 44 146 169 139 178 0.84 7 21 3.3 2e+03 -0.0 0.0 26 44 232 250 225 258 0.81 8 21 0.012 6.9 7.8 0.0 21 44 255 278 252 284 0.90 9 21 1 6.1e+02 1.6 0.1 22 43 285 306 280 316 0.83 10 21 7.1 4.2e+03 -1.1 0.1 22 44 341 363 337 373 0.79 11 21 7.2 4.2e+03 -1.1 0.0 21 48 368 394 360 396 0.82 12 21 0.003 1.8 9.7 0.2 14 48 389 422 385 424 0.88 13 21 4.4e-05 0.026 15.6 1.4 18 52 421 455 419 457 0.88 14 21 0.6 3.6e+02 2.3 0.1 21 44 471 494 461 499 0.88 15 21 0.0064 3.8 8.7 0.1 21 48 499 525 495 527 0.90 16 21 0.026 16 6.7 0.2 18 44 524 550 522 556 0.88 17 21 0.59 3.5e+02 2.4 0.1 16 45 573 603 570 606 0.81 18 21 0.0031 1.9 9.7 0.3 21 48 607 633 604 636 0.91 19 21 0.1 60 4.8 0.2 18 52 632 665 630 667 0.88 20 21 0.17 1e+02 4.1 0.0 21 48 774 800 758 806 0.86 21 21 3.1 1.8e+03 0.1 0.2 21 46 802 827 799 831 0.85
Sequence Information
- Coding Sequence
- ATGTCCCAGCACGCCGGCGAGAAACTGATATGCTGTgacgtttgcgattataaatgccgagagATGCGGAACTTGAGAAGGCACGCGCTGAatcacaccgacgagaaaccgttgagttgcgacctctgcgattttaaatgtcgGCAGCGCGAGTATTTGAGGAGGCACAGGTTAAGACACACGGACGAAAAGCCtttcagttgtgacctttgcgattataagtgccgatCTGTTAATTATTTGACTAAGCATAAGGTCGTGCATACGGACGAGAAGCCGTTGAACTGTGATCTATGCGATTTTAGGTGTCGAAAGAAGTGGAATTTGAAACAGCACAGGTTAAatcacaccgacgagaagccgttcggctgtgacctctgcgattataaatgccgacagcttCAGCGCTTAAAGGAGCACAGGTTGACGCACAGCGACGAGAAGCCCGTCGGTTGTAACGTTTGTGATTTCAGATGCAGACAGTTCAAACGCTTAAAGCAGCACATGTTAACGCACTCCGGCGAGAAGCCGgtcaaccgaactaaaTCGAAATTAAGCGGACCCAACCTAACTAACCCGAAACTAAGCGAACCCAACCTTGCTGAACTAAACCGAAATGAACCCAACTTACACATAAAAAGTGAAAGGTGCCAACAGATCGGcgaagttgaaacaaaaaataaaaaaacactgGAATGCGGGGTATGCGCTTCGAAATTTACAACTCGTACAAATTTGCGCAAACACGCcctgatacacaccggcgagaagccgttcggttgcggCCTTTGTAATTACCGGGGCCGCCAGTCCGCGCATTTGAAACGGCACATGTTAAATCACACCACCGGCGAGAAGCTGATGAgttgcgatctctgcgattatagaTGCCGCGAGTCGCGCGGTTTAAAAGATCACAAGTTAACACAcgccgacgagaaaccgttcagctgcGATATCTGCGGATATAAATGCGGACGGTTGTGGATATTGAATCAGCACAAGTTAAATCACAGCGACGACaaaccgttcagctgtgacctctgcgattataaatgccgacgtgCCGCACGTCTGAAAGAGCACTCGCtgatacacaccgacgagaagccgttaagctgtgatctgtgcgattacAAATCACGGTATTTCGGCGATCTGACCAAGCACAAGCTGAGACAcacgggcgagaagccgttcacttGCGAGGTTTGCGGTTATAAGTGCCGAAGATCCAGCGATTTGAAAGTGCATAAATTAAGGCATAGCGGCGAGAAACCCCTCCGTTGTAGCGTTTGCGATTACAGGTGCCGACAGGCCGGAAACTTGAGACGGCACATGTTgttgcacaccggcgagaaaccATGCCGCCAGCTCACCGGCTTGAGAAAGCACATActgacgcacaccggcgagaagccgttcagttgcgatctttgcgcTTACAAGTGCCGATCCTCGTCGTATTTAAAAGTGCACATGCTgaagcacaccggcgagaagccgtacaCTTGCGACGTTTGCGGGCATAAGTGCCGAAAATCCAGCGATTTGAAAGCGCATAAGTTAAGACACAGCGACGAGAGACCCGTCGGTTGTAACCTGTGTGATTCGAGGTTCCGACGGATCTCGGATTTGAAACGGCACATGCTgatgcacaccggcgagaaactgTTCAACTGCGGTCTGTGCGATTACAGGCGTCGGGGAGTCCGCAGGGTGAAAACGAAGAGTAATCAGAAAACACTGGAATGCCGAATATgcgattataaatttaaaacgtacgCAAATTTACGCAATCACATCATGATACACACCGGTGAGAAGCCTTTCACTTGTAACTATTGCAATTATAAGTGTCGCCAGCTTGGAAACCTGAGACTGCACAAGCTgaggcacaccggcgagaagccgttcacttgtgacctctgcgattataaatgccgacatctCACCAGCTTGAAGACGCACAAGCTGAAACATCCCgggaaaccgttcggttgtgatctctgcgattataaatgccgcgATCTTGGGCTTTTGAAACAGCACAGGCTGACGCACGGTGACCAGAGACAGTTCggctgcgatctttgcgattacaagtgtcgAATGTTGTGTCACTTAAAACAGCACAAGGTGTCGCACGACGAggtgaaaccgttcagttgtgatctttgtgaTTACACGTGCCGAAAGTTGGGGCACTTGAAACAGCACAAGGTGACGCATGCCgtcgagaagccgttcggttgtgatctctgcgattatagaGGTCGATGGCTCGAAGGATTGAAGCGAcacaagttaacgcacaccgacgagaaaccgttcagctgcggcgtttgcgattacaagttcCGAAGGCGCGCGGATTTGAAACAGCACGAGTTAAAACAtgccgacgagaaaccgttccaCTGCGGTTTTTGCGGTTACAAGTGTCGACGCGCCAACCAATTGAAACAGCATACGAGAAAGGCCCATCAGTCGGGCTTAACAGATTCCTAA
- Protein Sequence
- MSQHAGEKLICCDVCDYKCREMRNLRRHALNHTDEKPLSCDLCDFKCRQREYLRRHRLRHTDEKPFSCDLCDYKCRSVNYLTKHKVVHTDEKPLNCDLCDFRCRKKWNLKQHRLNHTDEKPFGCDLCDYKCRQLQRLKEHRLTHSDEKPVGCNVCDFRCRQFKRLKQHMLTHSGEKPVNRTKSKLSGPNLTNPKLSEPNLAELNRNEPNLHIKSERCQQIGEVETKNKKTLECGVCASKFTTRTNLRKHALIHTGEKPFGCGLCNYRGRQSAHLKRHMLNHTTGEKLMSCDLCDYRCRESRGLKDHKLTHADEKPFSCDICGYKCGRLWILNQHKLNHSDDKPFSCDLCDYKCRRAARLKEHSLIHTDEKPLSCDLCDYKSRYFGDLTKHKLRHTGEKPFTCEVCGYKCRRSSDLKVHKLRHSGEKPLRCSVCDYRCRQAGNLRRHMLLHTGEKPCRQLTGLRKHILTHTGEKPFSCDLCAYKCRSSSYLKVHMLKHTGEKPYTCDVCGHKCRKSSDLKAHKLRHSDERPVGCNLCDSRFRRISDLKRHMLMHTGEKLFNCGLCDYRRRGVRRVKTKSNQKTLECRICDYKFKTYANLRNHIMIHTGEKPFTCNYCNYKCRQLGNLRLHKLRHTGEKPFTCDLCDYKCRHLTSLKTHKLKHPGKPFGCDLCDYKCRDLGLLKQHRLTHGDQRQFGCDLCDYKCRMLCHLKQHKVSHDEVKPFSCDLCDYTCRKLGHLKQHKVTHAVEKPFGCDLCDYRGRWLEGLKRHKLTHTDEKPFSCGVCDYKFRRRADLKQHELKHADEKPFHCGFCGYKCRRANQLKQHTRKAHQSGLTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258358;
- 90% Identity
- iTF_01258358;
- 80% Identity
- iTF_01258358;