Basic Information

Insect: Prosopocoilus inquinatus
Gene Symbol: -
Assembly: GCA_036172665.1
Location: CM069876.1:48857345-48858853[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.72 4.3e+02 2.1 0.1 26 52 14 40 8 42 0.82

2 17 4.4 2.6e+03 -0.4 0.0 21 43 37 59 35 65 0.83

3 17 0.0048 2.8 9.1 0.1 20 44 64 88 48 97 0.80

4 17 2 1.2e+03 0.7 0.0 22 44 94 116 90 122 0.81

5 17 0.045 26 6.0 0.1 21 44 121 144 116 149 0.89

6 17 0.6 3.5e+02 2.4 0.2 21 44 149 172 146 179 0.88

7 17 0.017 10 7.3 0.1 22 44 178 200 173 205 0.88

8 17 0.002 1.2 10.3 0.3 21 44 205 228 201 236 0.86

9 17 1.5 9.1e+02 1.0 0.0 21 44 233 256 230 261 0.88

10 17 0.0032 1.9 9.6 0.0 21 44 261 284 258 288 0.91

11 17 0.13 76 4.5 0.4 21 43 289 311 286 315 0.90

12 17 0.13 76 4.5 0.0 21 44 317 340 312 347 0.88

13 17 0.46 2.7e+02 2.7 0.0 23 47 348 372 342 377 0.81

14 17 0.0074 4.4 8.5 0.3 21 44 374 397 371 405 0.87

15 17 0.27 1.6e+02 3.5 0.1 21 44 402 425 399 430 0.87

16 17 0.41 2.4e+02 2.9 0.1 21 44 430 453 427 458 0.87

17 17 0.14 84 4.4 0.3 21 44 458 481 455 490 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.72	4.3e+02	2.1	0.1	26	52	14	40	8	42	0.82
2	17	4.4	2.6e+03	-0.4	0.0	21	43	37	59	35	65	0.83
3	17	0.0048	2.8	9.1	0.1	20	44	64	88	48	97	0.80
4	17	2	1.2e+03	0.7	0.0	22	44	94	116	90	122	0.81
5	17	0.045	26	6.0	0.1	21	44	121	144	116	149	0.89
6	17	0.6	3.5e+02	2.4	0.2	21	44	149	172	146	179	0.88
7	17	0.017	10	7.3	0.1	22	44	178	200	173	205	0.88
8	17	0.002	1.2	10.3	0.3	21	44	205	228	201	236	0.86
9	17	1.5	9.1e+02	1.0	0.0	21	44	233	256	230	261	0.88
10	17	0.0032	1.9	9.6	0.0	21	44	261	284	258	288	0.91
11	17	0.13	76	4.5	0.4	21	43	289	311	286	315	0.90
12	17	0.13	76	4.5	0.0	21	44	317	340	312	347	0.88
13	17	0.46	2.7e+02	2.7	0.0	23	47	348	372	342	377	0.81
14	17	0.0074	4.4	8.5	0.3	21	44	374	397	371	405	0.87
15	17	0.27	1.6e+02	3.5	0.1	21	44	402	425	399	430	0.87
16	17	0.41	2.4e+02	2.9	0.1	21	44	430	453	427	458	0.87
17	17	0.14	84	4.4	0.3	21	44	458	481	455	490	0.85

Sequence Information

Coding Sequence: ATGATAATCGAAACTCACGTTCCAGGCGAAAGCGCTTTCCAATGTCGGCTCTGTGGCTCTAAATTTAAAACTCGCGCGAACATGCGCAAGCACATTAAGATACACAcaggcgagaaaccgttcgcctgcgatctttgcgattacaaatgccgagaAGCCGGAACTATGAAACAGCACGCGCTAACCCACACCGGCGAAACTCCGTTCAGCTGCGAGCATTGCGATTACAGGACCCGACAAGCCGGGAATCTCAAGCGACACgtgttaacacacaccgacgagaagccgttcggctgCTACCTCTGCGCTTATAAGGGCCGGAATTTATGGAAATTGAAACGTCACATGCTTACGCATTCCGAGGAGAAACCGTATTTCTGCGGCCTCTGCGAATACAAGTGTCGCGAAGCGGTAAACTTGCGGGAGCACATgctaacgcacaccggcgagaagccgttctgTTGCGACGTTTGTGATTACAAATGCCGAAACGCCGGGAAACTCAAGCAACACGTGCTGACCCACTCCACCCAAAAGCCGTTCACttgcgacctctgcgattacgAATGCCACCAAGCCGCCAACCTGAAAACCCACCTGTTAACACACacggacgagaagccgttctCTTGCGAACATTGTGATTATAAAACTCGCCAGGCCCCCAACTTGAGACGCCACAgtttaatacacaccggcgagaagccgttcagttgcgatttCTGCGATTACAAAGGCCGTGAACTCGCCAAGTTGAGAAAGCACatgttaacacacaccgacgagaagccattCTTCTGCGGCatctgcgattataagtgccgggACGCCGCAAATTTGAAACGGCACATGCTGACGCACACgggcgagaaaccgtttagcTGCGATCTTTGCAGTTACAGATGTCAAAGTGCGAGGAAGTTGAAGCGGCATGCGACGAAGCACACCGATGAAAAACCGTTCGagtgtgatctctgcgattacaagtgcaaACAATCCGCCAGCTTGAAAACTCACATGTTAACGCACACCGATGAGAAGATGCCGTATCACTGCgaactttgcgattacaagaGCCGTCTGGTCGGAAATTTAAAGCGGCACATGCttatacacaccggcgagaagccgtatagctgcgatctttgcgattataaatgccgggaGGCCAGAAAGTTGAAACGACATGCGTTGGTACATACTGAGGAGAAACCGTACAGTTGTGACgtctgcgattacaagtgccgtcAGGCCGGACATATGAAAAGTCACGTGTtaaagcacaccgacgagaagccgcaCCGCTGCGAATATTGCGATTACAAAAGCCGCCTAATCGGAAATTTGAAACGGCATATATtgaaacacaccggcgagaaaccgtacaGTTGTGAGCTGTGTGCATACAAATGCCGAGAACTATCGAAATTGAAACGTCATATGTTGACGCATACCGAGGAAAAACCAACAGAACTTGTGATACCTGCGATTACGAAAGTCGAGAATTGA
Protein Sequence: MIIETHVPGESAFQCRLCGSKFKTRANMRKHIKIHTGEKPFACDLCDYKCREAGTMKQHALTHTGETPFSCEHCDYRTRQAGNLKRHVLTHTDEKPFGCYLCAYKGRNLWKLKRHMLTHSEEKPYFCGLCEYKCREAVNLREHMLTHTGEKPFCCDVCDYKCRNAGKLKQHVLTHSTQKPFTCDLCDYECHQAANLKTHLLTHTDEKPFSCEHCDYKTRQAPNLRRHSLIHTGEKPFSCDFCDYKGRELAKLRKHMLTHTDEKPFFCGICDYKCRDAANLKRHMLTHTGEKPFSCDLCSYRCQSARKLKRHATKHTDEKPFECDLCDYKCKQSASLKTHMLTHTDEKMPYHCELCDYKSRLVGNLKRHMLIHTGEKPYSCDLCDYKCREARKLKRHALVHTEEKPYSCDVCDYKCRQAGHMKSHVLKHTDEKPHRCEYCDYKSRLIGNLKRHILKHTGEKPYSCELCAYKCRELSKLKRHMLTHTEEKPTELVIPAITKVEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258359;
90% Identity: iTF_01258359;
80% Identity: iTF_01258359;