Pinq024107.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:45113531-45117801[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.056 33 5.6 0.0 21 47 38 64 30 69 0.86 2 15 0.085 50 5.1 0.0 21 47 66 92 61 99 0.84 3 15 4.1 2.4e+03 -0.3 0.0 21 48 94 120 91 126 0.85 4 15 0.082 48 5.1 0.0 21 48 175 201 166 202 0.89 5 15 0.0059 3.5 8.8 0.4 18 45 200 227 198 233 0.92 6 15 0.033 20 6.4 0.1 22 44 244 266 229 270 0.79 7 15 0.0021 1.2 10.2 0.4 21 48 271 297 269 306 0.83 8 15 4.3 2.6e+03 -0.4 0.2 18 45 296 323 294 330 0.77 9 15 2.5 1.5e+03 0.4 0.0 21 44 327 350 323 360 0.72 10 15 1 6e+02 1.6 0.2 16 44 405 433 399 436 0.86 11 15 2.1e-06 0.0012 19.9 0.5 17 44 434 461 429 467 0.85 12 15 0.66 3.9e+02 2.2 0.0 21 44 467 490 463 497 0.85 13 15 4.2 2.5e+03 -0.4 0.4 20 44 521 545 516 549 0.82 14 15 4.2e-05 0.025 15.6 0.2 21 47 550 576 547 581 0.86 15 15 0.13 75 4.5 0.5 21 48 578 604 575 608 0.89
Sequence Information
- Coding Sequence
- ATGAGGGCGCACAAGTTAAgacacaccaacgagaagcgCTTCCGTTGCACCGATTGCGAATACAAATGCATCGAATCGTTCCAATTGAAGCGTCACATGCTAACGCACAACGACGAATTGCCGTTCAGCTGCGCAATTTGCAATAAGAAATTCAGACACATCGGCAACTTGAAGCACCACACGtcgatacacaccggcgagaaaccgttcagctgcGACCTATGCGATTACAAGTGTCGGGAAAATTCGATGCTGAAGCGGCATATGCTGATACACAGCGGCGaaaaaccgttcggttgtgagttttgcgattacaagtgccgggACAAGACGAGTCTGAAGTACCACATGTTGAAACACGCCGAGAAGTTGTTGagctgtgacctttgcgattacaggTGCGAACGTCCCAGCCGCCTAAACAGGCACAAGTTGAAACATTCGCGGTTCAGGTGCACTCATTGCGAATACAGATGTCTCGAATCGACGCAATTAGAACGGCATATGTTAACACATGACAACATAGAAGAGCCGTTCACCTGTGGCATTTGCGAGCAGAAATTCGGAGAATTGGTAACGCTGAAACGCCACATGCTGAGACATACCAGCGAAAAGCCGTTCAGATGCGAGCTTTGCAATCTCACTTTCCGACACGAGCAGAGTTTGAGGCAGCACATGTCATGGCACACTAGAAAgtGCGAACGGACTCCTAAACCTAAATTTGAGGCGAAAGGAAAAGTCGAATGCCCCGTATGTAATTCTACAGTTAGAACCGAAGCGTACTTAAAGAAACACATgctaatacacaccggcgagaaaccgttcaactgcgatctctgcgattacaaatgtcgaCAATCCTCCAATCTGAAGCTGCACAGGCTAAgacacaccaacgagaagcaTTTCGGTTGTACCCAATGCGAATACAGATGTCTCCAGTCGTCGCAATTGAAAGAGCACTTATTAACGCACAACGACGAAAAGCCGTTCACTTGCGCAACCTGCGGTAAGAAATTCATACGGCTCGGAAACTTCAAGACTCACATGTTGATACACACCGACGTAAAGCCGTTCAGCTGCGATTATTGCGATTACAAATCCAGACACAACCAGCATTTGAAAGAGCACATGGtcatacacaccggcgagacgCTGAGCTGTGACGCGTGCGATTTCAAAAGTGCGCGTTCCGACACCATGAAGCTGCACAGATTGAggcacaccaacgagaagcgTTTCAGTTGCGGCCTTTGCGAATACAGGTGCCTCGAATCTTCTGATTTAAAACGGCACATGTCAACGCACAGCAGCGAAAAGCCGTTCACGTGTGAAATTTGCCGCAAGAAATTCAAACAGCGCAGGAACTTAAGACACCACGCGTTAATACACACCGCCggcgaaaagccgttcagctgcgGCGTTTGTGATTACAAGTGCGGAGGCAGCGCGAGGCTGCGACAGCACATGTTGACGCACACCGAAAAGTCGTTGAGCTGTGACGTCTGCGATTACAAGAGCAGCCGTTCCGAGACCATGAAGCTGCACAAATTGCGGCATACCGAGGAGAAGCGGTTCAGTTGTGCTTTCTGCGAGTACAGATGTCACGAATCGTCGGAGCTAAAGCGGCACACGTTGATACACaacgacgagaagccgttcacctGTGGAGTTTGTCAACGGAAATTCAGACAGATTAAACACTTGAGACGTCACATGTTGATACACACCGGGGAAAAACCGTTCAATTGCAATCGCTGTGATTATGCGTGCCGAGAGAGCACAAAGTTGAAACAACACATTTTGAGACACACTGGCGAGAAGCGATCTTTACAATTCCAAGAGCCGATAGCAACAAAGTTTGAAGCTGCGGATTAG
- Protein Sequence
- MRAHKLRHTNEKRFRCTDCEYKCIESFQLKRHMLTHNDELPFSCAICNKKFRHIGNLKHHTSIHTGEKPFSCDLCDYKCRENSMLKRHMLIHSGEKPFGCEFCDYKCRDKTSLKYHMLKHAEKLLSCDLCDYRCERPSRLNRHKLKHSRFRCTHCEYRCLESTQLERHMLTHDNIEEPFTCGICEQKFGELVTLKRHMLRHTSEKPFRCELCNLTFRHEQSLRQHMSWHTRKCERTPKPKFEAKGKVECPVCNSTVRTEAYLKKHMLIHTGEKPFNCDLCDYKCRQSSNLKLHRLRHTNEKHFGCTQCEYRCLQSSQLKEHLLTHNDEKPFTCATCGKKFIRLGNFKTHMLIHTDVKPFSCDYCDYKSRHNQHLKEHMVIHTGETLSCDACDFKSARSDTMKLHRLRHTNEKRFSCGLCEYRCLESSDLKRHMSTHSSEKPFTCEICRKKFKQRRNLRHHALIHTAGEKPFSCGVCDYKCGGSARLRQHMLTHTEKSLSCDVCDYKSSRSETMKLHKLRHTEEKRFSCAFCEYRCHESSELKRHTLIHNDEKPFTCGVCQRKFRQIKHLRRHMLIHTGEKPFNCNRCDYACRESTKLKQHILRHTGEKRSLQFQEPIATKFEAAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258336;
- 90% Identity
- iTF_01258336;
- 80% Identity
- iTF_01258336;