Pinq024311.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:48034192-48040108[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.9 1.7e+03 0.2 0.0 26 48 12 33 5 36 0.87 2 11 0.032 19 6.4 0.1 18 48 32 61 30 66 0.89 3 11 1.1 6.7e+02 1.5 0.1 19 46 61 88 59 91 0.88 4 11 0.006 3.5 8.8 0.2 21 44 91 114 83 123 0.85 5 11 0.22 1.3e+02 3.7 0.2 21 45 119 143 116 146 0.89 6 11 0.006 3.6 8.8 0.2 21 48 147 173 144 180 0.87 7 11 0.004 2.4 9.3 0.1 23 44 267 288 262 293 0.90 8 11 0.0019 1.1 10.4 0.1 21 48 293 319 289 321 0.91 9 11 0.0048 2.8 9.1 0.1 19 44 319 344 318 349 0.89 10 11 0.009 5.3 8.2 0.2 25 44 381 400 370 409 0.86 11 11 0.037 22 6.2 0.2 19 48 458 487 443 489 0.81
Sequence Information
- Coding Sequence
- ATGTCGACACACACCGACGATAATAAAAAGTACGCTTGCGAGCTCTGCGACGACAAATTCCAAAACTCGTCGAACTTCAAAACGCACATGTTGAGACACGCCGGCGAGAAACCCTTCAGCTGCGAACTTTGCGATTACGGTTCACGAAACGCCGGCCACCTAAAACGCCACATGCTGAGGCACACCGGCGAGAGGCCGTTCGGTTGCGTCCGTTGCGACATCAAGTTCCGCGATATCTCGAGCTTGAAACGGCACGCGATGTTGCACTctgacgagaagccgttcacttGTGGACTTTGCGATTACAGTTGCGTCCATTCCTCCGATTTAAGACGACACGCgctgatacacaccggcgagaggcCGTTCTCCTGCGACcgttgcgattacaaatgccgagaCCTCTCCAATTTAAAACGGCACACGCTGTTGCACTctgacgagaagccgttcagttgtgacctttgcgattataaatgccgagatGCGACCAATTTGAAGCGGCACACGGTGAGGCACGAGGTTCAGAGGCCGTTCAGCTGTAAGCTTTGCAGTTACAAATGTAAGCGTTACGCGAGTTTGAAGCAGCACAGatgGCGACAAAGTAGATTTGGAATTGCCAAGAAAAAAACGACGTCTAAAGCTCGGGGTCTTCTGTGGACGCTGCTGACTCAGACAGGCGGGAAATCGCGCTCACCTCTGACACACACCGGCGAGATACCGTTCGCCTCTGATTTCAAAACCGAAAATTACGACGATTTACAACCGCACGTGAAGACAGACGCTGGCGCCGACACAGATCCGTTCAGTTGTAATCTTTGCGATTTCAGTTGCCGATATTCATCGAATTTGAAGCGGCATTTGTTGAGTcacaccggcgaaaagccgTTCAGGTGCAATCTGTGCGAGTACAAGTCCCGACAGAGCGGGACCTTAAAGAGGCACATGTTAAGACACAcgggcgagaaaccgttcgcttGTAAACGCTGCGACGCTAGATTCGGCGAGTCCAGGGCTCTTAAGCGACACATGTTGACACACGCCGGCGGTGAAAAGTCGTTCAGCTGTCAAATTTGCGATTACAGAGGCCTGCGGATGGAATACCTGAAAGCGCACATGTTGACGCACGCCGACAAGCAATAcggttgcgatctttgcgagtACAAGTGCCGTCAGTCTCGCGAATTAAAGAAGCACATGTtcatacacaccggcgagaaacacAAGTGTACCGTATGCAATTCGGAATTTAGCCACGGCAGCTACTTAAGGGCGCATTTGTTGACTCACAGCGACGTGAGACGGTTCAAGTGCGGGCAGTGCGAGTACGCAACCAAAACTCCCCAGGCGCTGAAATCGCACGTTTCGGTGCATTCGGCTGAACGGTCGTTCAAATGCCATCTTTGCGAGTACGCGGGAAAAGATTCGAGGTATTTAAGGCAACACGTCCTGGTGAAACACGAGAAACTGCTCAGGTGCAACGTGTGCGGGTACACGTGCGGACTGCCGCAGTCTTTAAAGAAGCACATGTCGACACATACCAACGAGAATCCTTCCTGA
- Protein Sequence
- MSTHTDDNKKYACELCDDKFQNSSNFKTHMLRHAGEKPFSCELCDYGSRNAGHLKRHMLRHTGERPFGCVRCDIKFRDISSLKRHAMLHSDEKPFTCGLCDYSCVHSSDLRRHALIHTGERPFSCDRCDYKCRDLSNLKRHTLLHSDEKPFSCDLCDYKCRDATNLKRHTVRHEVQRPFSCKLCSYKCKRYASLKQHRWRQSRFGIAKKKTTSKARGLLWTLLTQTGGKSRSPLTHTGEIPFASDFKTENYDDLQPHVKTDAGADTDPFSCNLCDFSCRYSSNLKRHLLSHTGEKPFRCNLCEYKSRQSGTLKRHMLRHTGEKPFACKRCDARFGESRALKRHMLTHAGGEKSFSCQICDYRGLRMEYLKAHMLTHADKQYGCDLCEYKCRQSRELKKHMFIHTGEKHKCTVCNSEFSHGSYLRAHLLTHSDVRRFKCGQCEYATKTPQALKSHVSVHSAERSFKCHLCEYAGKDSRYLRQHVLVKHEKLLRCNVCGYTCGLPQSLKKHMSTHTNENPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258355;
- 90% Identity
- iTF_01258355;
- 80% Identity
- iTF_01258355;