Pinq024099.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:45025793-45032724[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.35 2.1e+02 3.1 0.1 21 48 17 43 15 48 0.87 2 19 1.6 9.7e+02 1.0 0.1 26 46 50 69 42 75 0.83 3 19 0.27 1.6e+02 3.5 0.3 25 43 76 94 71 100 0.89 4 19 0.0038 2.3 9.4 0.0 21 47 128 154 125 160 0.86 5 19 9 5.4e+03 -1.4 0.0 21 44 156 179 154 183 0.84 6 19 0.002 1.2 10.3 0.1 21 51 184 214 181 216 0.92 7 19 1.5 8.9e+02 1.1 0.0 26 45 230 249 218 255 0.85 8 19 1.2 6.9e+02 1.4 0.1 14 47 274 307 268 312 0.84 9 19 4.9 2.9e+03 -0.6 0.2 22 44 310 332 305 337 0.84 10 19 0.0029 1.7 9.8 0.4 21 44 337 360 335 366 0.91 11 19 0.12 71 4.6 0.6 17 44 388 416 375 421 0.83 12 19 0.0026 1.5 9.9 0.1 21 51 421 451 418 452 0.87 13 19 0.035 21 6.3 0.2 21 44 449 472 447 477 0.90 14 19 5.6e-05 0.033 15.3 0.3 21 47 477 503 474 509 0.86 15 19 7.7 4.6e+03 -1.2 0.0 24 47 549 572 545 577 0.81 16 19 0.2 1.2e+02 3.9 0.1 21 44 574 597 570 604 0.89 17 19 1.7 1e+03 0.9 0.1 23 50 663 690 659 693 0.84 18 19 0.42 2.5e+02 2.9 0.0 21 44 689 712 687 719 0.87 19 19 0.0022 1.3 10.1 0.1 18 47 741 770 734 778 0.85
Sequence Information
- Coding Sequence
- ATGTTTGCCTCCAAAGGAAGCTTGAAGACTCACGTgctgatacacaccggcgagaaaccattcagttgcgatctttgcgactACAAGTGCCGGTACACCTCGTCATTGAAACGCCACACGTTGAAACACACCGGCGATACGGCGTTCGgttgcgacctttgcgattacaagggCCGCCAACACCGATACTTGAAGCAGCACATGTTGACGCACGCCGGAAAGTCGCTGACTTGCgacgtttgcgattataaatgccgacagccCACCAGTCTGAAGCGACACAAACTGgggcacaccggcgagaagctgTTCGGTTGCCGCCTTTGCGAGTACAAATCCCTCAAAGCATCGGACGTAAAACGGCACACGTTAATACACAACGGCGAAAAGCCGTTCGCCTGTGAGATTTGCGATAATAAATTCAGAGACCGCGGACACTTGAGACGTCACATgttgatacacaccggcgagaagccgttcggctgCGATCTTTGCGACTACAAGTGCCGATATAACGCGTCGTTGAAATGCCACATGTTGAttcacaccggcgagaagccgttcagttgcgacctttgcgattacaagtgcggGCAAAGCAAATATTTGAAACAGCACATGTTAATAAGACATACCGGAAAGTGCAAACGGACTCCTAAACCTGAACTCGAGGACAAAAGAAAACTCGACTGCCGCATATGCGATTCTACGTTCTCGTCAAGAGGAAACTTGAAGAAGCACTTgctgatacacaccggcgagaagcggTTCAGCTGCGAcgtctgcgattacaaatgcggACGCTCCGACACCATGAAGAAGCACAGACTAACGCATTCCGCCGAGAAGCGCTTCAGCTGCGGAATCTGCCGCAACAAGTTCAAGCGACTCGAATACCTGAGACTCCACATGTCgttgcacaccggcgagaagcgaTTCGCCTGCGAACTTTGCGACTACCAGTGTCGACAAATCACGCATCTCAAACACCAcatgttaatacacaccggcgaaaagccgTACGCCTGCGATCtatgcgattacaagtgccgacaACCTCGAAGCTTGAAACGGCACGTCTCGAAACACGACGGAAAGTCGTTGAGTTGCGacgtttgcgattacaagtgtcgACGCTCCGACACCATGAAGCTTCACAAGTCGAGGCAGcacgccgacgagaagccgtcCGGCTGTAGTCTCTGCGAATACACGTGCTCGCAAGCGTCACAATTAAAACAACACATGCTGACACACGGTAGCGAAAAGCTGTTCACTTGCGAAACTTGCGATAGGATGTTCAGGCGACACGAAAACCTGAAGCGGCACATGTTACTgcacaccggcgaaaaaccGTTCACTTGctatctttgcgattacaaatgccggcaGTACCAAAGTCTGAAGCAGCACGTGTTGATGCACAACGACGAAAAGCCGTTCACCTGCGAGATTTGTGATAAAAAGTTCAGACAACGCGCGCACTTGAGACGCCACATGTTGATACATACCGACGAAAAACCGGAAACAGCACATGTTAAGATCAAACGAAAACTCTTAACTTTAAAACGGTTAACACCGTTAACACATGTTAACACGTACCGgtGCAAACGAACTTCTAAATTCAAACTCGAGGACAAAACAAAGGCGCAATGCCACGTATGCGATTctaaatttacaacaaaaacatCTTTGAAGAAGCACCTACTgatacataccggcgagaagccgttcagttgcgacctCTGCAATTACAAGTGCCGGCTGCATTCGAACTTGAAGAAGCACGTGCTGACTCACGGCGAAAAATCGTTGAGCTGCGACgcttgcgattacaagtgtcgACGCTCCGACAAGATGAAGCTGCACAAGTTGAGACACACCGGCGACGACGAGAAACGTCACGCATGCAGTATCTGCGAATACAAGTGCTTCGAAACGTCGACCTTAAAATCGCACATGTTAATACACGACGGCGACAGGCCGCGGCCCTTCGCCTGCGAAATCTGCGACACCAAATTCACGAAACTCCACCACCTGAGATGCCACATGAcgatacacaccggcgaaaagccgttcagttgcgatctcTGCGACTACAAGGGTCGAAACAACTCGAAGTTGAAGCGGCACATGCTAACGCACGCCGAGAAGTCGTTGAGCTGCGACGTTTGCGATTTCAAGTGCAGTCGTTCGGATTCGATGAAGGCGCACAAACTCAGACACACCGACGAAAAGCCGTTCCTCTGTGGAATTTGCGCCAAACAATTCAGGCTAATCAGGCACTTGAAACGCCAcatgttaatacacaccggcgaaaagccgttcggttgcgatctttgcgattacaagggACGAGACCTCTCAGTTTTGAAACGACACCGGATGACACACTCTGTCGAGAAACGGTTGTAG
- Protein Sequence
- MFASKGSLKTHVLIHTGEKPFSCDLCDYKCRYTSSLKRHTLKHTGDTAFGCDLCDYKGRQHRYLKQHMLTHAGKSLTCDVCDYKCRQPTSLKRHKLGHTGEKLFGCRLCEYKSLKASDVKRHTLIHNGEKPFACEICDNKFRDRGHLRRHMLIHTGEKPFGCDLCDYKCRYNASLKCHMLIHTGEKPFSCDLCDYKCGQSKYLKQHMLIRHTGKCKRTPKPELEDKRKLDCRICDSTFSSRGNLKKHLLIHTGEKRFSCDVCDYKCGRSDTMKKHRLTHSAEKRFSCGICRNKFKRLEYLRLHMSLHTGEKRFACELCDYQCRQITHLKHHMLIHTGEKPYACDLCDYKCRQPRSLKRHVSKHDGKSLSCDVCDYKCRRSDTMKLHKSRQHADEKPSGCSLCEYTCSQASQLKQHMLTHGSEKLFTCETCDRMFRRHENLKRHMLLHTGEKPFTCYLCDYKCRQYQSLKQHVLMHNDEKPFTCEICDKKFRQRAHLRRHMLIHTDEKPETAHVKIKRKLLTLKRLTPLTHVNTYRCKRTSKFKLEDKTKAQCHVCDSKFTTKTSLKKHLLIHTGEKPFSCDLCNYKCRLHSNLKKHVLTHGEKSLSCDACDYKCRRSDKMKLHKLRHTGDDEKRHACSICEYKCFETSTLKSHMLIHDGDRPRPFACEICDTKFTKLHHLRCHMTIHTGEKPFSCDLCDYKGRNNSKLKRHMLTHAEKSLSCDVCDFKCSRSDSMKAHKLRHTDEKPFLCGICAKQFRLIRHLKRHMLIHTGEKPFGCDLCDYKGRDLSVLKRHRMTHSVEKRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258308;
- 90% Identity
- iTF_01258308;
- 80% Identity
- iTF_01258308;