Pinq024108.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:45121540-45128165[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.8 2.8e+03 -0.5 0.2 22 43 11 32 7 38 0.72 2 15 0.031 18 6.5 0.3 21 44 38 61 34 65 0.84 3 15 0.059 35 5.6 0.1 21 44 66 89 63 95 0.90 4 15 1.7 1e+03 0.9 0.1 22 44 95 117 91 122 0.85 5 15 0.0098 5.8 8.1 0.2 21 52 122 152 119 154 0.87 6 15 0.99 5.9e+02 1.7 0.1 21 44 149 172 146 176 0.86 7 15 0.0017 1 10.5 0.2 21 47 177 202 163 206 0.88 8 15 3 1.8e+03 0.1 0.0 21 44 256 279 253 283 0.88 9 15 1.2 7e+02 1.4 0.0 16 44 285 313 281 320 0.81 10 15 0.044 26 6.0 0.1 18 46 343 371 336 377 0.85 11 15 0.014 8.3 7.6 0.4 22 43 375 396 370 401 0.87 12 15 0.0038 2.3 9.4 0.0 21 44 402 425 400 429 0.92 13 15 0.18 1.1e+02 4.0 0.2 22 47 485 510 476 515 0.83 14 15 0.21 1.3e+02 3.8 0.0 21 44 512 535 510 540 0.90 15 15 0.0051 3 9.0 0.1 21 44 540 563 538 568 0.91
Sequence Information
- Coding Sequence
- ATGAACATGCACAAATTAaaacacaccaacgagaagcgCTTCAGCTGCGGCATCTGCCGCAATAAATTCAAGCGACTCGAACATTTGAGACACCACGCGCTaacacacaccggcgaaaaaccAATCAGCTGCGgtctctgcgattacaaatgcatCAGATCGTCGCAATTAAAACGGCACATGTTGGCGCACAACAACGAAAAGCCGTTCGCCTGCGAACTCTGCGATAAAAGATTCAGGCAACTCGCGCACTTGAGGACCCACATgttgacgcacaccggcgaaaaaACGTTCGGCTGCGAACTTTGCGATTACACGTGCCGAGGGGCCTCGTCGTTGAAACGCCACATgctaatacacaccggcgaaagGCCGTTCAGCTGCGAACTTTGCGATTACGTGTGCCGAGGGGCCGCGCCGTTGAAACGCCACATGTTAATACACACGGAGAAGCCGTTCGCTTGCGATCTCTGCGACTACAAGTGCCACGAGAGCTCAACGTTAAAACACCACATGTTAaaacacaccggcgaaaagccCTTCGGTTGCGAGCTTTGCGATTACATGTGCCGAAGGACGAGGTCGTTGAAGCGCCACATGTTAAAGCACGCCGGCGAGAAGCAATTTAAGTGCAGGGGAGGGAACTTCGAGCTAAAGCAACACGTGTTAATTCAGGCCCGCGGCGAAAAGCGATTCGGTTGCGAACTTTGCGAGTACAGGACCCGAGACGTCACGGCGTTAAAATGCCACAAgttgatacacaccggcgagaaaccgttcggatGCGATCTGTGCGATTTCAAGTGCCGATGGACCTCGTCGTTGAAGCAACACATgttcAAACGTACGCCTGAATCCATGCTTAAGGCGAAAAAGACATTCGAATGCCGCATTTGTGATTCCGCGTTTACGACAAAAGGAAACTTGAAGAAGCACGTgctgatacacaccggcgagaagcggTACAGTTGCGacgtttgcgattacaagtgcggCCGTTCCGACACCATGAACCAGCACAAATTaagacacaccgacgagaagcggTTCAGCTGTGGAATTTGCCACGCAAAAATCAAGCGACGCGATTATTTGAAATTCCACATGAAgatacacaccggcgaaaagcGATTcacttgcgatctttgcgattaccaGTGTCGACAAAGCAGGCAACTGAAACTCCACacgttaatacacaccggcgagaagccgttcgcctGCGAACTTTGCGATTTCAAGTGTCGAGGAAGCTCAAATTTGAAGCGGCACATGGTGACTCACACGAAGTTATTGAGCTGTGACGTCTGTGATTATAAAAGTAGACGTTTTGACACCATGAAGCGGCACAGATTAGGTCATGCCAAGGAGTACCGGTTCGGTTGCACTCTTTGCGAATACAAATTCTTTAATGAAAGGCAATTAAAACAGCACGTGTTGACGCACAGCGACGAAAAACGGTTCGCATGTGATGTTTGCAGTAAGACGTTCAGGCGACGCGAACACTTAAAGCGTCAcatgttaatacacaccggcgagaagcctttcagttgcgatctttgcgtTTACAAGGGCCGACAATACGAAACCCTGAAGAAGCACATGTTGATACACAACAACGAAAAGCCGTTCGCTTGTGGAGTTTGCAGAAATCAATTCAGGCGATCCGAAGACATGAAACGTCACATGTTGACACACAACGGCGAAATGTTTGAAACGCAAACAGACCAGTTTTTCGAGCGCGCCGAAGcaattcatttgtaa
- Protein Sequence
- MNMHKLKHTNEKRFSCGICRNKFKRLEHLRHHALTHTGEKPISCGLCDYKCIRSSQLKRHMLAHNNEKPFACELCDKRFRQLAHLRTHMLTHTGEKTFGCELCDYTCRGASSLKRHMLIHTGERPFSCELCDYVCRGAAPLKRHMLIHTEKPFACDLCDYKCHESSTLKHHMLKHTGEKPFGCELCDYMCRRTRSLKRHMLKHAGEKQFKCRGGNFELKQHVLIQARGEKRFGCELCEYRTRDVTALKCHKLIHTGEKPFGCDLCDFKCRWTSSLKQHMFKRTPESMLKAKKTFECRICDSAFTTKGNLKKHVLIHTGEKRYSCDVCDYKCGRSDTMNQHKLRHTDEKRFSCGICHAKIKRRDYLKFHMKIHTGEKRFTCDLCDYQCRQSRQLKLHTLIHTGEKPFACELCDFKCRGSSNLKRHMVTHTKLLSCDVCDYKSRRFDTMKRHRLGHAKEYRFGCTLCEYKFFNERQLKQHVLTHSDEKRFACDVCSKTFRRREHLKRHMLIHTGEKPFSCDLCVYKGRQYETLKKHMLIHNNEKPFACGVCRNQFRRSEDMKRHMLTHNGEMFETQTDQFFERAEAIHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258348;
- 90% Identity
- iTF_01258348;
- 80% Identity
- iTF_01258348;