Pinq024449.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:49625539-49627228[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0025 1.5 10.0 0.1 21 47 10 36 8 42 0.85 2 13 2.7 1.6e+03 0.3 0.1 21 42 38 59 35 64 0.82 3 13 2 1.2e+03 0.6 0.2 16 43 61 88 52 93 0.75 4 13 0.65 3.8e+02 2.2 0.0 20 43 93 116 85 121 0.85 5 13 0.21 1.2e+02 3.8 0.3 17 44 144 171 137 177 0.83 6 13 0.00028 0.17 13.0 1.2 21 52 176 207 173 209 0.92 7 13 0.008 4.7 8.4 0.0 21 44 232 255 221 260 0.90 8 13 0.015 9 7.5 0.0 21 43 260 282 256 288 0.89 9 13 0.017 10 7.3 0.1 21 44 288 311 283 319 0.85 10 13 0.58 3.4e+02 2.4 0.1 21 43 316 338 313 343 0.90 11 13 0.28 1.7e+02 3.4 0.2 18 43 341 366 337 375 0.74 12 13 0.33 2e+02 3.2 0.0 21 43 372 394 367 399 0.89 13 13 0.00053 0.31 12.1 0.0 8 43 387 422 382 427 0.86
Sequence Information
- Coding Sequence
- ATGAAACGGCACGtcttaatacacaccggcgagaagcctttCGCCTGCGAtttctgcgattacaaatgccgacagtCTGCAACTTTGAGGCAACACGTCTTAATACACACCGGGGAGAAGCCCTTCGCttgcgatctctgcgattataaatgccgacggtCTGGAACCTTGGGATTGCACAGGgcgacgcacaccggcgagaaaccgttcgcttGCGACCTGTGCCCTTATAAGTGCTTGCGGATCACAAACATGAAGCAGCACAGGTTAACGCACACGGACGAGAAGCCTTTCGCctgcgacctttgcgattataaattccGACACGCCGTTACCTTGAAGAAACATAGATGCCAACGGACTTCTCAAACCAACACCAGAGACAGAGCGCGCGATTCTGGCTCTAAATTAAAAACGCCGGAGCATTCGTCGACAcataccgacgagaaaccgttcagatGCGTCGTGTGCGATTTCAAATGTCGACTGCCCAGCCGCCTGAAAAGGCACATGCTGATACACACCGCCGAAAAGCCATACAGCTGCGATCTTTGCTCGTACAAGTGCCGGTGCCCCAgaaatttgaaacggcacaTGGTGACACACACCAGCGCGAAGCCCTTCGCCTGCGAACaatgcgattacaagtgccaaTTCGCCGGAAACTTGAAAACGCACATGTTAACGCAcagcgacgagaagccgttcgcctGCGACCTCTGCGATTTTAAGTGCCGACAGGCCGGAAACCTGAAATCGCACATgctgacgcacaccggcgagaagcctttCACTTGCGATCTCTGCGGCTTTAAATGTCGACAGCTCGGAAACATAAAGAAACACAGGCTGACGCACATGGACGAGAAGCCTTTCGCTTGCGAtttctgcgattacaaatgccgagaGTCTGCAAATTTGAAGCAGCACGCCTTAATACACACCGGTGAGAAGCCCTTCGCttgcgatctctgcgattataaatgccgactgTCTGGGACCTTGCGATTGCACAGGGCGACgcataccggcgagaaaccgttcaccTGCGATCTGTGCCCTTATAAATGCTTACGAATTACAAACATGAAGCAGCACAAGTTGACGCACACGGACGAGAAGCCTTTcgcttgcgatctttgcgattctAAATTCCGGCACGCCGTTAGTTTGAAGAAACATAGattaacgcacaccggcgagaggCCTTTcgcttgcgatctttgcgattacaagtttCGACAATCCGGAAGCTTGAAGCGACACAAGTTGACGCACGCTAAATAG
- Protein Sequence
- MKRHVLIHTGEKPFACDFCDYKCRQSATLRQHVLIHTGEKPFACDLCDYKCRRSGTLGLHRATHTGEKPFACDLCPYKCLRITNMKQHRLTHTDEKPFACDLCDYKFRHAVTLKKHRCQRTSQTNTRDRARDSGSKLKTPEHSSTHTDEKPFRCVVCDFKCRLPSRLKRHMLIHTAEKPYSCDLCSYKCRCPRNLKRHMVTHTSAKPFACEQCDYKCQFAGNLKTHMLTHSDEKPFACDLCDFKCRQAGNLKSHMLTHTGEKPFTCDLCGFKCRQLGNIKKHRLTHMDEKPFACDFCDYKCRESANLKQHALIHTGEKPFACDLCDYKCRLSGTLRLHRATHTGEKPFTCDLCPYKCLRITNMKQHKLTHTDEKPFACDLCDSKFRHAVSLKKHRLTHTGERPFACDLCDYKFRQSGSLKRHKLTHAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258486;
- 90% Identity
- iTF_01258486;
- 80% Identity
- iTF_01258486;