Pinq024265.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47399674-47404073[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0029 1.7 9.8 0.0 22 45 46 69 35 75 0.88 2 22 2.2 1.3e+03 0.6 0.0 21 45 157 181 154 188 0.82 3 22 0.55 3.3e+02 2.5 0.1 22 48 186 211 181 214 0.89 4 22 0.11 64 4.7 0.1 21 45 213 237 210 246 0.83 5 22 2.2 1.3e+03 0.6 0.0 21 48 241 267 233 272 0.79 6 22 0.39 2.3e+02 3.0 0.1 20 48 268 295 261 301 0.85 7 22 0.64 3.8e+02 2.3 0.1 16 45 292 321 286 329 0.81 8 22 0.52 3.1e+02 2.5 0.3 21 45 371 395 363 402 0.84 9 22 0.11 63 4.8 0.1 21 45 399 423 392 431 0.79 10 22 2.2 1.3e+03 0.5 0.0 19 44 426 450 418 458 0.72 11 22 1.8 1.1e+03 0.8 0.0 21 43 455 477 444 482 0.82 12 22 0.022 13 7.0 0.1 21 44 483 506 479 510 0.91 13 22 0.079 47 5.2 0.1 21 45 511 535 507 543 0.84 14 22 2.6 1.6e+03 0.3 0.2 21 48 539 565 535 571 0.80 15 22 0.38 2.2e+02 3.0 0.0 13 45 586 618 582 620 0.85 16 22 0.47 2.8e+02 2.7 0.1 21 43 622 644 618 655 0.74 17 22 4.3 2.6e+03 -0.4 0.1 21 44 650 673 642 676 0.87 18 22 0.029 17 6.6 0.0 21 45 678 702 671 705 0.89 19 22 0.00013 0.079 14.0 0.1 21 50 706 735 703 737 0.88 20 22 0.017 10 7.3 0.1 21 47 734 760 730 765 0.89 21 22 2.2 1.3e+03 0.6 0.1 24 48 767 790 761 793 0.84 22 22 0.0036 2.1 9.5 0.0 15 49 814 848 809 851 0.85
Sequence Information
- Coding Sequence
- ATGATAATCCTTAAAGAGCGAAAAATAGAGAAAGATTCTAAAATCAAGTTTCTTTTCAGATGCCAACAAATCGTAACCAAGGAAACAAGCGAACGCAGCACCGAACATCATAAAACTGACCTAGAACATACCGGCGAAAAGCGGTTaagctgtgatctttgcgattacataggccgaaaaagtaaaaacttgCGCAAGCATATGcgaacgcacaccggcgagaagcggttcagttgcgatctttgcgactATAAGTGCCAACGGTTGTATCGCTTGCAAAGCCACAAGTTAACGCACAACGGCGAGAACTCGTTAAGTTGTTATATTTGCGATTACACAGCCGGCCTGAGTGAAGATTTGGATGAGCATATGAGAACACACGCCGGCGAGAAATGGTtcagctgtgatctttgcgattataaaagcCAGGCGCTTGGTCATCTGAAAAGGCACAAGTTAATACACACTggtgagaagccgttcagaTGTAGCATATGCGGTTTCAAAACTCGATATGCCACTTATTTGAACCATCATGTGAAAACGCACACCGGTGAcaagccgttcagttgtaatctttgcgattatagcTGTCGACATTTCGCAAACTTGAAGGCGCACGAGTTGAAACACAGCGgagagaagccgttcagttgcaaTATTTGCGGCTACGCAGCTCGACAGAAGGGGCGCTTGACCGAACATATGCGAACTCACACCGGCGAGaggccgttcagttgcgatctttgcgattataaaagcCAGCAGTTGGGAAGTTTGACAAGGCACAAGTTAAaacataccggcgagaagccgttcagttgtgatgtttgcggttataaatgtcgacaattCGCTGGTTTGAAGTTGCACAGGTTAAGACACGGCGGTGAGAAGCCGTTTAGTTGCAACCTCTGCGGTTATAAATGCCAGCAGTTGGGTAGCTTGAAAAAGCACACGCTaatacataccggcgagaagccGTGCGAACTGATTATCAAGTCGGAAATTGTAACgcataccggcgagaagccgcgGTTGAGTTGTCGCCAATGCAGTTACAAACGCCGACAGTTCGCTAGCTTCAAAAGGCACAACTTAACGCACACTGGCGAGAAGCCCTTCACTTGCAAAACGTGCGGTTTCCAAACACGACGGAGAGACCACCTGAGAGAGCACGCGCGAACGCACACCtgcgagaagccgttcacttGTAAAATCTGCGGTTACAAAGCCGGACAGAGCGGACGCATGAACGAGCACATGCGAACGCACagcgacgagaaaccgttcagctgtgacGTTTGTGATTATAAAAGCCAGCGGTTCGGGAACCTGAAGACGCACAAGCAGACGCACagcggcgagaagccgttcagttgcgacctttgcgattataagtgcctgCAGTTCGGAAGTTTGAAGAGGCACAACttaacgcacaccggcgagaagccgttcgtcTGCGCTGTTTGCGATTTCCGTACACGACAGAGTGAGCACTTGAAAGAGCACATGCGGACGCATACCGGTGAAATGCCGTTCGTTTGTAACATTTGCGGGTACAGAGCCCGACAGAGCGGACGCTTGAATGAGCACGTAcgaacgcacaccggcgagaagccgttcagttgtaacctctgcgattataagtgccagCGGCTGGCGTATTTGAAAAGGCACGAGTTAActcacaccggcgagaagccgttcaattGTAAAATTTGCGGATGTCAACGGATTAAAATTGCAATCGAGAAGACGCACACGAAACGTACCGGCGAAAAGCTGTTCCGTTGTGATATTTGCGGTAAAAGCTTCGGGCGACAGGGAAATTTGAAACGTCACGTGcaaacgcacaccgacgagcaGCCGTTCAGCTGTAACATCTGCGACTACAAAACCCGACTCAACGGGTTGTTGAAGGAGCACGCtctgatacacaccggcgagaaaccgtacgTTTGCAATACTTGCGGTTACCAGAGCCGACAGAAGTCGCATTTGAACAGCCACATGcgaacgcacaccggcgagaaaccgtacgACTGTAACGTTTGCGGCTACCAAAGTCGACAGAGCGGAACTCTGAAGAAGCACATGATGATACACACCGGTGAAAAGCCGTTCACATGCAATCGTTGCGATAAGACCTTCCGACAGAAGGAAAATTTGAGGGTTCACTTGCAGGTGCACtccggcgagaagccgtacggttgtgatctctgcgataaAAGCTTCCGACAGAGGGAACACTTGAAGCTTCACTTGCAATTGCACGCCGCCGCCGGCGAGAAGCTGTACAGTTGCGGCATTTGCGATTTTAAGTGCAAACAGTTTGTTTATCTCAAGAGACACGAGTTAAGCCATACGGGCGAGAAGCTGTTCAGTTGcggtctttgcgattacaagtgcgcGCTCCTCGGAAATTTGAAGAAGCACACGtcaacgcacaccggcgagttGCCGTTTTTCTGTGGCCTTTGCGATCAAAAATTCAGGCAGATCAGGTATTTGGAACGGCACATGCAGGAAGATCACGCCGACAAGAAGTCTTAA
- Protein Sequence
- MIILKERKIEKDSKIKFLFRCQQIVTKETSERSTEHHKTDLEHTGEKRLSCDLCDYIGRKSKNLRKHMRTHTGEKRFSCDLCDYKCQRLYRLQSHKLTHNGENSLSCYICDYTAGLSEDLDEHMRTHAGEKWFSCDLCDYKSQALGHLKRHKLIHTGEKPFRCSICGFKTRYATYLNHHVKTHTGDKPFSCNLCDYSCRHFANLKAHELKHSGEKPFSCNICGYAARQKGRLTEHMRTHTGERPFSCDLCDYKSQQLGSLTRHKLKHTGEKPFSCDVCGYKCRQFAGLKLHRLRHGGEKPFSCNLCGYKCQQLGSLKKHTLIHTGEKPCELIIKSEIVTHTGEKPRLSCRQCSYKRRQFASFKRHNLTHTGEKPFTCKTCGFQTRRRDHLREHARTHTCEKPFTCKICGYKAGQSGRMNEHMRTHSDEKPFSCDVCDYKSQRFGNLKTHKQTHSGEKPFSCDLCDYKCLQFGSLKRHNLTHTGEKPFVCAVCDFRTRQSEHLKEHMRTHTGEMPFVCNICGYRARQSGRLNEHVRTHTGEKPFSCNLCDYKCQRLAYLKRHELTHTGEKPFNCKICGCQRIKIAIEKTHTKRTGEKLFRCDICGKSFGRQGNLKRHVQTHTDEQPFSCNICDYKTRLNGLLKEHALIHTGEKPYVCNTCGYQSRQKSHLNSHMRTHTGEKPYDCNVCGYQSRQSGTLKKHMMIHTGEKPFTCNRCDKTFRQKENLRVHLQVHSGEKPYGCDLCDKSFRQREHLKLHLQLHAAAGEKLYSCGICDFKCKQFVYLKRHELSHTGEKLFSCGLCDYKCALLGNLKKHTSTHTGELPFFCGLCDQKFRQIRYLERHMQEDHADKKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258282;
- 90% Identity
- iTF_01258282;
- 80% Identity
- iTF_01258282;