Basic Information

Insect: Prosopocoilus inquinatus
Gene Symbol: -
Assembly: GCA_036172665.1
Location: CM069876.1:47775854-47781373[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.098 58 4.9 0.2 22 44 6 28 3 34 0.88

2 29 0.07 41 5.3 0.0 21 48 33 59 29 65 0.86

3 29 7.7 4.6e+03 -1.2 0.1 21 44 61 84 57 88 0.80

4 29 0.06 36 5.6 0.7 21 44 89 112 73 116 0.89

5 29 0.0087 5.1 8.2 0.1 21 48 117 143 113 146 0.91

6 29 0.075 44 5.2 0.2 17 48 141 171 138 174 0.85

7 29 0.46 2.7e+02 2.7 0.1 21 43 173 195 168 201 0.87

8 29 0.0027 1.6 9.9 0.0 21 52 201 232 196 233 0.87

9 29 0.57 3.4e+02 2.4 0.1 21 48 229 255 227 262 0.87

10 29 6.7 4e+03 -1.0 0.0 18 48 254 283 245 288 0.78

11 29 0.44 2.6e+02 2.8 0.2 16 48 292 324 277 326 0.73

12 29 0.004 2.3 9.3 0.0 18 44 323 349 321 354 0.88

13 29 0.0037 2.2 9.4 0.0 21 47 354 380 351 385 0.85

14 29 0.28 1.6e+02 3.4 0.3 22 44 383 405 379 412 0.89

15 29 0.25 1.5e+02 3.6 0.4 22 48 411 436 408 438 0.88

16 29 0.00067 0.4 11.8 0.7 18 43 435 460 433 465 0.89

17 29 0.33 2e+02 3.2 0.4 21 48 466 492 462 498 0.86

18 29 0.0051 3 9.0 0.8 18 48 519 548 506 551 0.90

19 29 0.0025 1.5 10.0 0.2 20 44 594 618 592 622 0.93

20 29 0.2 1.2e+02 3.9 0.3 21 44 623 646 618 651 0.86

21 29 1.1 6.3e+02 1.5 1.4 20 49 650 678 635 682 0.84

22 29 0.64 3.8e+02 2.3 0.1 18 44 676 702 666 710 0.85

23 29 0.34 2e+02 3.2 0.4 21 47 707 732 703 736 0.88

24 29 0.0062 3.7 8.7 0.2 21 44 735 758 732 765 0.89

25 29 0.33 2e+02 3.2 0.0 21 44 791 814 783 818 0.89

26 29 0.0075 4.5 8.4 0.0 21 49 819 846 816 853 0.85

27 29 0.37 2.2e+02 3.0 0.2 22 46 876 900 871 906 0.85

28 29 0.22 1.3e+02 3.7 0.1 21 43 903 925 901 930 0.90

29 29 0.0018 1 10.5 0.1 21 44 931 954 926 959 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.098	58	4.9	0.2	22	44	6	28	3	34	0.88
2	29	0.07	41	5.3	0.0	21	48	33	59	29	65	0.86
3	29	7.7	4.6e+03	-1.2	0.1	21	44	61	84	57	88	0.80
4	29	0.06	36	5.6	0.7	21	44	89	112	73	116	0.89
5	29	0.0087	5.1	8.2	0.1	21	48	117	143	113	146	0.91
6	29	0.075	44	5.2	0.2	17	48	141	171	138	174	0.85
7	29	0.46	2.7e+02	2.7	0.1	21	43	173	195	168	201	0.87
8	29	0.0027	1.6	9.9	0.0	21	52	201	232	196	233	0.87
9	29	0.57	3.4e+02	2.4	0.1	21	48	229	255	227	262	0.87
10	29	6.7	4e+03	-1.0	0.0	18	48	254	283	245	288	0.78
11	29	0.44	2.6e+02	2.8	0.2	16	48	292	324	277	326	0.73
12	29	0.004	2.3	9.3	0.0	18	44	323	349	321	354	0.88
13	29	0.0037	2.2	9.4	0.0	21	47	354	380	351	385	0.85
14	29	0.28	1.6e+02	3.4	0.3	22	44	383	405	379	412	0.89
15	29	0.25	1.5e+02	3.6	0.4	22	48	411	436	408	438	0.88
16	29	0.00067	0.4	11.8	0.7	18	43	435	460	433	465	0.89
17	29	0.33	2e+02	3.2	0.4	21	48	466	492	462	498	0.86
18	29	0.0051	3	9.0	0.8	18	48	519	548	506	551	0.90
19	29	0.0025	1.5	10.0	0.2	20	44	594	618	592	622	0.93
20	29	0.2	1.2e+02	3.9	0.3	21	44	623	646	618	651	0.86
21	29	1.1	6.3e+02	1.5	1.4	20	49	650	678	635	682	0.84
22	29	0.64	3.8e+02	2.3	0.1	18	44	676	702	666	710	0.85
23	29	0.34	2e+02	3.2	0.4	21	47	707	732	703	736	0.88
24	29	0.0062	3.7	8.7	0.2	21	44	735	758	732	765	0.89
25	29	0.33	2e+02	3.2	0.0	21	44	791	814	783	818	0.89
26	29	0.0075	4.5	8.4	0.0	21	49	819	846	816	853	0.85
27	29	0.37	2.2e+02	3.0	0.2	22	46	876	900	871	906	0.85
28	29	0.22	1.3e+02	3.7	0.1	21	43	903	925	901	930	0.90
29	29	0.0018	1	10.5	0.1	21	44	931	954	926	959	0.89

Sequence Information

Coding Sequence: ATGATACACACCGGtcagaagccgttcagttgcagtttttgcgattacaagtgtcgCCAGCACGCCAATTTAAAACAGCACATGCTGCAGCACACCGgggagaaaccgttcagttgcggCCTTTGCGACTACAAGTGTCGACAGTACGGCAATTTAAAACTGCACATACTgaagcacaccggcgagaagccgtacgCTTGCGACCTTTGCGGTTACAGGTGCCAACGCGCCGAACACTTAAAGCAGCACATGTTCCAGCACAcgggcgagaaaccgttcgcgTGCGAgctctgcgattacaagtgtcgGCGGCAGGAAAACCTGCGGTCTCACATGCTAACGCATACGGGTGAGAAACCGTTCGCCTGCGACATGTGCGACTATAAGTGCCGACAGCTTCGCACCTTGAAGAAGCACAAGTTGAGGCACAGCGACGAGAAGCCGCTCgcttgtgacctttgcgatttcaAGTGCCGTCATTCCACGAGCCTGAAGcagcacaagttaaagcacgccgacgagaagccgttcgcttgcgatctctgcgattatcgATGCCGAAACGTCGGAAATTTGAAGCAGCACAAGCTgcagcacaccgacgagaagccgttcagctgcgacGTGTGCGATTACAAGTCCCGACAGCATAAGAATCTGAAGGCTCACATGTTgttgcacaccggcgagaaaccgttcagatGTGATTTTTGCGACTACGAGTGTCGACAGCTTGGCACTTTGAAGCGGCACAGGTTGAAGCACACCGTCGAGAAGCTGTTCGCTTGTGATCTTTGCAATTACAAGTGTCGTTACGTCGGGAATTTGGAGAAGCACAAGTTGAAACACACCGGCGGGAAGACGTTCAATTTCCAGTGTCGAGAAGCGAGCGACAGAGAAACAGCGAAATGTCGAATATGCGATTCGAAATTCAAGTCCCGCACAAACTTGCTCAATCATATCTTgagacacaccggcgagaagccgttcgcttgCGATCTGTGCGGTTACAAAGCCAGATATTCCGGAAACCTGAAGCGGCACATGTTACAGCACACCAACGAAAAGCCATTCGGCTGCGACCTCTGCGATTTCAAATGCCGACAGTCGACGAGTCTGAAGCGGCACAAGTTGCTGCACGCCGaggagaagccgttcagttgcggtCTCTGCGATTACAGATGCCGACAGCACCAGCATTTGAAATCCCAcatgttaatacacaccggcgagaaatcGTTCACTTGTGACATTTGCAACTACAGGTGTCGAAGTTTTATCAATTTGAAAACGCACAAGTTGAGACACAGCGGCGAGAAGCCGCTCAGTTGTGCTCTTTGTGATTTCAAATGTCGACAGTATAGTAATTTGAGGCGGCACAAGTTAACAcacgccgacgagaagccgctcagttgtgatctttgcgattataaatgtcgatgCTATGTAAATTTGAGGGAGCACAAGTtaaaacacaccgacgagaaaccgttcggctgTGAACATTGCGAGTATAGATGCCGAGGCGCGGGACGTATGAAACAGCACGTGTTGAGGCACACCGACGAAAAACCATTCGTTTGTGATCTGTGCGGTTATAAATGCCGGAGGACGGGAAATTTGAAACGCCACATGTTAAGACACGGCCGACAAGAAATCGTTCAGTTGTGTCAATGGTACCCCCAAACTAAAACAGCGAATGAAGGAAGATTCCAGTGCCGAATTTGTAATTTGAAGTTTATACGTCACGCTCTTCTGCGCGATCACATTTTAGTACATAccagcgagaagccgttcgcttgCAGTTTCTGCGATTACCGATGCCGACAGTACGGAAATTTAAAACGACACGTGTTcaaacacaccgacgagaagccgttcacctgcgacctttgcgattacagaTGCCGATATCCCGAGAGTCTCCGGCAGCACACGTTAAAGCACACCGGCGAACGGCCGTTCAGCTGCGACCATTGCGATTTCAAATGCGGCCACTCCGGAAACTTGAAGCAGCACATGTTGAGGCACACCAGCGAGAAGATGTTCGGGTGTAGACTCTGCGATTTCAAGTGCCGGTATTCCAATAGCTTGAAGCAGCACATGTTGcagcacaccggcgagaagccgtacagttgtgatagttgcgattataaatgtcggcaGCCCCTACATTTGAGACAGCACATGTTGAAGCACACCGGAGAGATGCCGTTCCGCTGCgatgtttgcgattataaatgccgacaatcCGCGAGCTTGAAGCGGCACATGACGAAGCACGCTGGCGAGAAACTGTTCGGTTGTGATGTTTGCGGCTTCAAATCCCGATTGGATGCAGatttgaaacggcacaagttaatacacactgacgagaaaccgttcagttgcgatATTTGCGATTGTAAATTCCGACGGGATGGAGACTTGAAAAGTCACGTTTTAACGCACACGGACGAGAAGCCGATCAGCTGCGatttttgcgattacaagtTTCGACAGATCAAAGATTTAAAGAAACACCTGTTGACGCACTACGATGAAAAACCTTTCGGCTGTAGTCTTTGTGATTACAAGTGCCGACGGCCTGACTATTTGAAAGTGCACATGTTGACACACAGCGGCGACAAGCCCTTCAGTTGTAGCCTTTGTGATTACAGATGCAGGCATTCCGCGTCTTTAAAGAAGCACGTATTGATACATTCCGACGAGAAGCcattcagttgtgatctttgcgattatagatgTCGAATCTCGGGAGATTTGAAGCGGCATAGCTtgacacacaccgacgagacaCCGTTCGTATGTGGCCTTTGCGATTTCAAATGCCGACAGTCCCGATCATTTAAAAGGCACATGTTAAAACATGACGGAGAAGAGTCGCATAAGTTGTGA
Protein Sequence: MIHTGQKPFSCSFCDYKCRQHANLKQHMLQHTGEKPFSCGLCDYKCRQYGNLKLHILKHTGEKPYACDLCGYRCQRAEHLKQHMFQHTGEKPFACELCDYKCRRQENLRSHMLTHTGEKPFACDMCDYKCRQLRTLKKHKLRHSDEKPLACDLCDFKCRHSTSLKQHKLKHADEKPFACDLCDYRCRNVGNLKQHKLQHTDEKPFSCDVCDYKSRQHKNLKAHMLLHTGEKPFRCDFCDYECRQLGTLKRHRLKHTVEKLFACDLCNYKCRYVGNLEKHKLKHTGGKTFNFQCREASDRETAKCRICDSKFKSRTNLLNHILRHTGEKPFACDLCGYKARYSGNLKRHMLQHTNEKPFGCDLCDFKCRQSTSLKRHKLLHAEEKPFSCGLCDYRCRQHQHLKSHMLIHTGEKSFTCDICNYRCRSFINLKTHKLRHSGEKPLSCALCDFKCRQYSNLRRHKLTHADEKPLSCDLCDYKCRCYVNLREHKLKHTDEKPFGCEHCEYRCRGAGRMKQHVLRHTDEKPFVCDLCGYKCRRTGNLKRHMLRHGRQEIVQLCQWYPQTKTANEGRFQCRICNLKFIRHALLRDHILVHTSEKPFACSFCDYRCRQYGNLKRHVFKHTDEKPFTCDLCDYRCRYPESLRQHTLKHTGERPFSCDHCDFKCGHSGNLKQHMLRHTSEKMFGCRLCDFKCRYSNSLKQHMLQHTGEKPYSCDSCDYKCRQPLHLRQHMLKHTGEMPFRCDVCDYKCRQSASLKRHMTKHAGEKLFGCDVCGFKSRLDADLKRHKLIHTDEKPFSCDICDCKFRRDGDLKSHVLTHTDEKPISCDFCDYKFRQIKDLKKHLLTHYDEKPFGCSLCDYKCRRPDYLKVHMLTHSGDKPFSCSLCDYRCRHSASLKKHVLIHSDEKPFSCDLCDYRCRISGDLKRHSLTHTDETPFVCGLCDFKCRQSRSFKRHMLKHDGEESHKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258288;
90% Identity: iTF_01258288;
80% Identity: iTF_01258288;