Pinq014532.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069873.1:32321111-32330242[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.059 3.7 9.1 2.0 1 23 219 242 219 242 0.97 2 29 7.9 4.9e+02 2.4 2.5 1 23 279 302 279 302 0.91 3 29 0.1 6.4 8.4 5.9 1 23 308 331 308 331 0.95 4 29 0.0043 0.27 12.7 2.7 1 23 337 360 337 360 0.96 5 29 0.27 17 7.0 2.1 1 23 366 389 366 389 0.97 6 29 0.2 12 7.5 6.1 1 23 395 418 395 418 0.97 7 29 0.033 2.1 9.9 7.5 1 23 424 446 424 446 0.97 8 29 0.2 12 7.5 2.8 1 23 452 475 452 475 0.93 9 29 8.8 5.5e+02 2.3 7.0 1 23 481 504 481 504 0.96 10 29 0.0037 0.23 12.9 2.3 1 23 510 533 510 533 0.95 11 29 0.048 3 9.4 3.4 1 23 539 562 539 562 0.96 12 29 0.17 11 7.7 0.9 1 23 568 591 568 591 0.93 13 29 0.31 19 6.9 4.4 1 23 597 620 597 620 0.96 14 29 0.0027 0.17 13.4 2.9 1 23 626 649 626 649 0.96 15 29 0.091 5.7 8.6 2.8 1 23 655 678 655 678 0.96 16 29 0.5 31 6.2 5.0 1 23 684 707 684 707 0.96 17 29 0.046 2.9 9.5 0.8 1 23 713 736 713 736 0.94 18 29 0.0014 0.089 14.2 3.5 1 23 743 765 743 765 0.96 19 29 0.022 1.4 10.5 2.4 1 23 771 794 771 794 0.95 20 29 0.03 1.9 10.1 4.4 1 23 800 823 800 823 0.97 21 29 0.16 10 7.7 8.1 1 23 829 852 829 852 0.94 22 29 0.24 15 7.2 4.2 1 23 858 881 858 881 0.96 23 29 0.44 28 6.4 3.2 1 23 887 910 887 910 0.96 24 29 0.41 26 6.5 3.3 1 23 916 939 916 939 0.96 25 29 0.097 6 8.5 2.5 1 23 945 968 945 968 0.97 26 29 0.067 4.2 9.0 3.8 1 23 974 997 974 997 0.96 27 29 0.075 4.7 8.8 1.4 1 23 1003 1026 1003 1026 0.94 28 29 2.6e-05 0.0016 19.7 1.9 1 23 1032 1054 1032 1054 0.98 29 29 0.008 0.5 11.9 2.2 1 23 1060 1083 1060 1083 0.97
Sequence Information
- Coding Sequence
- ATGACCGATACGGAGTCGGGGGAGCTCTCCCTCGGCTCTCCAGTTGAGTGTGAGTTTTTAACCCCCATTGTAGTCTCCCTGACAACCTATGCAAAAATCCAGTTAGCAATAgacaatagaTTTATCGACCACGAAACCAACGAATTATTTGAGATGATGATGGTTGAAGCAAACAATTTCGTTCAAGACCTCGTTGTCAAAACTGAACCTGAAGATGAAAAcgttatttacattaaaaaagaaccagaagaagaaaatggtCGAAACCCTTGTGATGATTGTAATGGAACGTACAACATTGGCAATGTAAAAGCCGAGCCTTTAGGTGGGGTTAACAATCTAGACGAAGAAATACCAGTTGATATTAACATACCATCGGAAGACGGTGATCATATTTGCATTGCAGAACACGATGAACCCGAACTTATAAATAATGTGGAAAGAACTGATGCATTTAATGTAATTCATGGCGAATTAGAACCCGAGGTTGAATTAAACTGCGAAAGTACTTTCGAGAATTGGAATGGAACTTGTATAAAAGCTGAGCCTTTGTTCATAGAAAGGACACAACAAATGAGAGAGGATCATGTAGAGTCAGAATTAACTGATATTAAACAAATCTTCACTGAAgccaatgaaaatattttaatcagatACAACTGTCCTTTGTGTGGTTTTGACACTGATCACCGAGGAAAATTTAGATACCACATTAAAGTGAAACACAGGCTTCTGAAAGCTAGAAGATTCCACTGTGATTTCTGCGATTATAGAGCGACTAGTTATAATTGTTTAGCATCTCATAAAAGATACAAACATTCAGGCGAGAAACAATACGAATGTACTCTGTGTGAGTATAAGGGCATGACTGCAGCTTGTTTGAAATCACACAATAAATTTAAGCACAGCGATGAAAAGCCATACAAATGTGACATATGTGAGTTTAGAAGCACGACCTCGTGTCAGTTAAAATCGCACAGGAAATTTAAACATTCCAAAGAGAAACCGTACAGATGCACCTTTTGTGATTACAGAGCGACGACGGCATCACAATTAAAATCACACAAGCAATACAAGCATACACTTGTAAAGGCTTATAAATGTGACTTGTGTGAGTATAGGGGAGCCACGAACTTATGTTTAAAATCACATATAATGTATAAACATACAAaggaaaaacaatacaaatgcGATTTATGTGAGTATAAAGGCACGACCTCGTATTGTTTAAAATCTCATGTAAGACATAAGCACAGTAGTGAGAAACCGTATCAGTGTAACATGTGTGAATACAAATGTGTTTCGTCATCTCAACTACACAAACATAAATACAAACATCTAAATATAAAGCCGTACAAATGTAATTTATGTGATTATCGAGGCACCAGCACTACCCTCCTGAATTCGCATTTTAAATTCAAGCATTCTACCGTGAAAGAATTTAAGTGCGACCAATGTGAGTATAAGGGCACAACGTTTTATTGTTTGGCATCTCACAGAAAACACAAGCACACTGGTGAGAAACCATACAAGTGTGATTTGTGTGATTATAAAGCGACGAGTTCATCTCAGCTAAACTCGCATAAAAAATTCAGGCATTCAAACGAGAAGGAATATAaatgtgatctctgcgattacgaGGGGACAACCCCATACTGCCTCAAATCGCACAAGCAATATAAACATTCAACTGAGAAACCTTTCGCGTGTGACTTATGTGAATATAAAGGTGCGAGCTCGTCCTTGTTAAAGTCgcataaaaaattcaaacattccGGTGATTGTAAATTCAAGTGTGAAATGTGCGAATATGAAGGTACGACCTCTTATTGCTTGAATTCGCATAAAAAATACAAGCACTCGAATGAAAAGCCGTATAAATGTGAGCTGTGTGAGTACAAAAGCACGACCTCGTACCAATTAAAATCGCACGTCAGGTTTAAGCACTCGACTGAAAAGCCTTACCAATGTGATTTGTGTGATTACAAAGGAACCACAGCGGTATGTCTTAAATCACATAAGCAATATAGGCATTCTGGTGAGAAACCATTTAAATGTGACATGTGCGATTACCGAGGTACTACATCGCTTTGTTTGAAATCGCACAAAAAATACAGGCATTCCAACGAAAAGCCCTACAAATGTGACTTATGTGACTATAAAGGCGCAAGTAACGCTCTGTTAAATTCCCACAAACAATTTAAACACTCTAACGAGAGCAAGAAGTACGAGTGCGATTTATGTGAATACAAGTGCACAACTGCGTCTCAATTAACGAAACACAGATATAATCATTTTGGTGAGAAACCCTACAAATGCGACTTATGCGAATACAGAGGGACCAGCTCTAGTTTGCTTAAATCGCACAAAAAATTCAAGCActcaaacgaaaagaaatacaaatgtGACTTGTGCGATTATCAAGGAACGACTTCTTACTGCTTAAAATCTCATCAAAACTACAAGCATTCAAGTGAGAAGCCACACAAGTGCGATTTTTGTGAATACCGATGTACGAGTTCATCTCAATTAAATTCGCATAAGAAATTCAAGCATTCTAACGAGAAGCAATACAAGTGCGATTTATGCTCATATGAAGGTACAACACCGTACTGTTTAAAGTCacacaaaaaatacaaacatgaCACCGTGAAACAATACAAATGTGACTTGTGTGAATACGAAGGCGCAACATCTTACTGCCTAAAATCACATAAACAATATAAACATTCTAACGAGAAACCTTTCCAATGTGACTTATGCGGTTATAAAGGAGCGACTTCACTCTGTTTAAAATCTCACAAGAAATACAAGCATTACTCAGAGAAGAAATTCAAATGTGCACTGTGTAATTACGAGGGGGCTACTCCATATTGCTTGAAGTCTCATACGAGGTACAAACATTCTGGTGAAAAATGTTTCAAGTGCGATGAGTGTCCTTACGAAGGTACAACATCCTACTGTTTGAAATCACATAAGCAGTACAAACATTCAAACGAGAAACCTTACAAGTGTGATACGTGCGAATACAAAGGTTCCAGTTCGGCTTTGTTAAATTCTcacaaacaatttaaacattCGGACGAGAAACCGTTTCAGTGTCCTGTTTGTTCCTACAAATGCGTCAGGGCCAGCAATCTAAAGAGTCACATGTACATTCATAGTGAGACGAAACCTTACAAGTGTTACGACTGTGATTATCAGTGCACGCAAGTTAGACTTTTGATGCAACATATCGAGAAAGATCACACTGGACGACAGCCCTATAAATGTAACATATGCAAATGCAAATGTGCTAGCCACAGACAACTAAGATTTCATAAGCAATTTAAACACTTAGCTTAG
- Protein Sequence
- MTDTESGELSLGSPVECEFLTPIVVSLTTYAKIQLAIDNRFIDHETNELFEMMMVEANNFVQDLVVKTEPEDENVIYIKKEPEEENGRNPCDDCNGTYNIGNVKAEPLGGVNNLDEEIPVDINIPSEDGDHICIAEHDEPELINNVERTDAFNVIHGELEPEVELNCESTFENWNGTCIKAEPLFIERTQQMREDHVESELTDIKQIFTEANENILIRYNCPLCGFDTDHRGKFRYHIKVKHRLLKARRFHCDFCDYRATSYNCLASHKRYKHSGEKQYECTLCEYKGMTAACLKSHNKFKHSDEKPYKCDICEFRSTTSCQLKSHRKFKHSKEKPYRCTFCDYRATTASQLKSHKQYKHTLVKAYKCDLCEYRGATNLCLKSHIMYKHTKEKQYKCDLCEYKGTTSYCLKSHVRHKHSSEKPYQCNMCEYKCVSSSQLHKHKYKHLNIKPYKCNLCDYRGTSTTLLNSHFKFKHSTVKEFKCDQCEYKGTTFYCLASHRKHKHTGEKPYKCDLCDYKATSSSQLNSHKKFRHSNEKEYKCDLCDYEGTTPYCLKSHKQYKHSTEKPFACDLCEYKGASSSLLKSHKKFKHSGDCKFKCEMCEYEGTTSYCLNSHKKYKHSNEKPYKCELCEYKSTTSYQLKSHVRFKHSTEKPYQCDLCDYKGTTAVCLKSHKQYRHSGEKPFKCDMCDYRGTTSLCLKSHKKYRHSNEKPYKCDLCDYKGASNALLNSHKQFKHSNESKKYECDLCEYKCTTASQLTKHRYNHFGEKPYKCDLCEYRGTSSSLLKSHKKFKHSNEKKYKCDLCDYQGTTSYCLKSHQNYKHSSEKPHKCDFCEYRCTSSSQLNSHKKFKHSNEKQYKCDLCSYEGTTPYCLKSHKKYKHDTVKQYKCDLCEYEGATSYCLKSHKQYKHSNEKPFQCDLCGYKGATSLCLKSHKKYKHYSEKKFKCALCNYEGATPYCLKSHTRYKHSGEKCFKCDECPYEGTTSYCLKSHKQYKHSNEKPYKCDTCEYKGSSSALLNSHKQFKHSDEKPFQCPVCSYKCVRASNLKSHMYIHSETKPYKCYDCDYQCTQVRLLMQHIEKDHTGRQPYKCNICKCKCASHRQLRFHKQFKHLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466867; iTF_01258619; iTF_00465404;
- 90% Identity
- iTF_00465404;
- 80% Identity
- -