Dhop009645.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065420.1:22230424-22233662[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.047 5.2 9.2 2.0 1 23 167 190 167 190 0.97 2 29 2.8 3.1e+02 3.6 4.8 1 23 198 221 198 221 0.97 3 29 0.43 48 6.2 2.6 1 23 227 250 227 250 0.94 4 29 0.14 15 7.7 5.8 1 23 256 279 256 279 0.95 5 29 0.012 1.3 11.1 2.7 1 23 285 308 285 308 0.96 6 29 0.22 24 7.1 2.1 1 23 314 337 314 337 0.97 7 29 0.012 1.3 11.1 5.6 1 23 343 366 343 366 0.97 8 29 0.03 3.3 9.8 6.8 1 23 372 394 372 394 0.97 9 29 0.12 13 7.9 2.6 1 23 400 423 400 423 0.94 10 29 0.003 0.33 13.0 2.3 1 23 458 481 458 481 0.95 11 29 0.038 4.3 9.5 3.4 1 23 487 510 487 510 0.96 12 29 0.1 11 8.2 0.9 1 23 516 539 516 539 0.94 13 29 0.071 7.8 8.7 4.5 1 23 545 568 545 568 0.96 14 29 0.0021 0.24 13.4 2.9 1 23 574 597 574 597 0.96 15 29 0.072 8 8.6 2.8 1 23 603 626 603 626 0.96 16 29 0.23 26 7.0 3.6 1 23 632 655 632 655 0.96 17 29 0.15 17 7.6 0.7 1 23 661 684 661 684 0.94 18 29 0.0014 0.15 14.1 4.4 1 23 691 713 691 713 0.96 19 29 0.021 2.4 10.3 2.5 1 23 719 742 719 742 0.95 20 29 0.024 2.6 10.1 4.4 1 23 748 771 748 771 0.97 21 29 0.061 6.8 8.9 7.7 1 23 777 800 777 800 0.94 22 29 0.48 53 6.0 3.3 1 23 806 829 806 829 0.96 23 29 0.35 39 6.5 3.2 1 23 835 858 835 858 0.96 24 29 0.35 39 6.5 2.9 1 23 864 887 864 887 0.96 25 29 0.032 3.6 9.7 2.8 1 23 893 916 893 916 0.97 26 29 0.054 5.9 9.0 3.8 1 23 922 945 922 945 0.96 27 29 0.039 4.3 9.5 1.2 1 23 951 974 951 974 0.94 28 29 2e-05 0.0023 19.8 1.9 1 23 980 1002 980 1002 0.98 29 29 0.0064 0.7 11.9 2.2 1 23 1008 1031 1008 1031 0.97
Sequence Information
- Coding Sequence
- ATGGTGATGGTTGAAGCAAATAATTTCGTTCAAGACGTCACGGTCAAAACTGAACCCGAAGATGAGAACatcatttacattaaaaaagaactCGAAGAAGAAAATGCCAGAAACCCTTGCGATGATTACAACGGAGTTTATAACATCACCAGTGTGAAAGCTGAGCCTTTGTGTGTTAATGATTTGGACGAAGAAATACCAGCTGATATTAGTGTACTATCAGAAAATAATCTTGAAGGTGGGAACCGAACTTGCACTGAACctgaatttataaataatatagaAAGAACTGACACACACGACGTAAGTCAAGGCGAATTAGAACCTGTAGTTGAATTAAACTGTGGAAATGCTTTCGAGAATTGGAACGGGACATGTAACGTAAAAGTTGAACCTTTATACATGGAAAGGACACAGACAGGAGAGGATCACGTTGATTCAGAATTAACTGATATTAAAGAAATCTTCACCGAGgccaatgaaaatattttaatcagGTACAACTGTCCTTTGTGTGGTTTTGACACTGATCACAGGGGCAAATTTAGATACCACATAAAAGTAAAGCACAGGCTGCTGAAAGCCAGAAGATTCAAGTGTGATTTCTGCGAATACAGGGCGACCAGTTATAATTGCCTGGCATCGCATAAAAGATACAAACATTCAGGCGACAAACAGTACGAGTGTAGCCTGTGTGAATATAAAGGCACGACTGCGGCTTGCTTAAAGTCGCACAATAGGTTTAAGCACAGCGATGAAAAGCCGTACAAATGCGAAATATGTGAGTTTAGAAGTACGACATCTTGCCAACTAAAATCGCATAAAAAATTCAGACATTCCAAAGAGAAGCCGTACAGATGCACCTTTTGTGAGTACAGGGCCACAACGGCATCACAATTAAAATCACATAAGCAATACAAACATACAGTCGTGAAGGCTTACAAATGTGACCTGTGTGAGTACAGAGGTGCCACAAACTTATGTTTAAAATCACATATAATGTACAAacatacaaaagaaaaacaatacaAATGCGTTATATGTGATTATAAAGGTACGACGTCATATTGTTTAAAGTCTCACATACGACATAAACACAGCAGTGAGAAACCGTACGAATGCAACATGTGTGAATATAAATGCGTTTCCTCATCTCAACTACACAAgcataaatataaacatttaaatataaaaccGTACAAATGTAATTTATGCGAGTATAGAGGCACCAGCTCTACACTTCTGAATTCGCATTTTAAATTCAAGCATTCCAGCGTGAAAGAATTTAAATGCGACCAATGTGAATATAAAGGCACGACATTTTATTGTTTGGCCTCACATAAAAAGCacaagcacaccggtgagaagccgtacAAATGTGATTTGTGCGATTATAAAGCTACAAGTTCATCTCAGTTAAACTCGCATAAAAAATTCAGACATTCGAACGAAAAGGAATATAAATGCGATCTATGTGATTACGAGGGAACGACACCGTACTGCCTGAAATCGCACAAGCAATACAAGCACTCAGGCGAAAAGCCTTATGCGTGTGACTTATGTGAATACAAAGGTGCGAGCTCGTCCTTGTTAAAATCgcataaaaaattcaaacattctgGAGATTGTAAATTCAAGTGTGAAATGTGCGATTACGAAGGTACCACTTCTTATTGTTTGAATTcgcataaaaaatataaacactcGACTGAAAAGCCATATAAATGTGAGTTGTGTGAGTACAAGAGCACGACGTCGTACCAATTGAAATCGCACGTCAGGTTTAAGCATTCTACAGAGAAGCCTTATCAATGTGATTTATGCGATTACAAAGGAACCACGGCAGTTTGTCTTAAATCACATAAGCAGTACAGGCATTCCGGTGAGAAACCGTTTAAGTGTGACGTGTGTGATTATCGAGGTACTACAGCGCTCTGCTTGAAATCACATAAGAAATACAGGCATTCGAACGAAAAGCCTTTCAAATGTGATTTATGTGAGTACAGAGGCGCGAGTAATGCCTTGCTAAATTCTCATAAGCAATTTAAACATTCTAATGAAAGCAAAAAGTACGAATGCGACTTATGTGAATACAAGTGCACCACATCTTCCCAATTAACAAAACACAGGTACAATCATTTCGGTGAGAAACCATATAAATGCGACTTATGTGAATACAAAGGTACGAGTTCCAGCTTGTTAAAATCACATAAAAAATTCAAGCATTCTAAcgaaaagaaatataaatgtGACTTGTGTGACTATCAAGGAACGACATCTTACTGCTTAAAATCACATCAAAATTACAAGCACTCGAGTGAAAAGCCACACAAGTGCGATTCCTGTGATTATCGGTGCACCAGTTCATCTCAGTTAAATTCGCATAAGAAATTCAAGCATTCTAGCGAGAAGCAATATAAGTGTGATTTGTGTGCGTACGAAGGTACGACACCATACTGTTTAAAATCACATAAGAAATACAAACACGATACCGTGAAACAATATAAATGTGACTTATGTGAATACGAAGGTGCAACATCGTACTGCTTAAAATCACATAAACAATATAAACATTCTAACGAGAAGCCCTTTAAATGCGACTTATGCGGTTATAAAGGAGCGACTGCACTCTGTTTAAAGTCCCATAAGAAATACAAACATTACTCGGAGAAGAAGTTCAAGTGTGAGTTATGTAATTACGAGGGAGCTACTCCATATTGCTTGAAGTCTCATACGAGGTACAAACATTCTGGTGAAAAATGTTTCAAGTGCGATGAGTGTCCTTATGAAGGTACAACTTCCTACTGTTTGAAATCACATAAACAGTACAAACATTCAAATGAGAAACCCTACAAGTGTGATATGTGCGAATACAAAGGTTCCAGTTCGGCTTTGTTAAATTCGCATAAACAATTCAAACATTCGGATGAGAAGCCGTTTCAGTGTCCTGTTTGTTCCTACAAGTGTGTCAGAGCCAGCAATCTGAAGAGTCACATGTACATTCATAGTGAAACGAAACCTTACAAGTGTTATGACTGTGATTATCAGTGCACGCAAGTTAGACTTTTGATGCAACATATCGAGAAAGACCACACTGGACGTCAACCATATAAATGTAACATATGCAAATGCAAATGTGCTAGCCATAGACAATTAAGATTTCATAAGCAATTTAAACACTTAGCTTAG
- Protein Sequence
- MVMVEANNFVQDVTVKTEPEDENIIYIKKELEEENARNPCDDYNGVYNITSVKAEPLCVNDLDEEIPADISVLSENNLEGGNRTCTEPEFINNIERTDTHDVSQGELEPVVELNCGNAFENWNGTCNVKVEPLYMERTQTGEDHVDSELTDIKEIFTEANENILIRYNCPLCGFDTDHRGKFRYHIKVKHRLLKARRFKCDFCEYRATSYNCLASHKRYKHSGDKQYECSLCEYKGTTAACLKSHNRFKHSDEKPYKCEICEFRSTTSCQLKSHKKFRHSKEKPYRCTFCEYRATTASQLKSHKQYKHTVVKAYKCDLCEYRGATNLCLKSHIMYKHTKEKQYKCVICDYKGTTSYCLKSHIRHKHSSEKPYECNMCEYKCVSSSQLHKHKYKHLNIKPYKCNLCEYRGTSSTLLNSHFKFKHSSVKEFKCDQCEYKGTTFYCLASHKKHKHTGEKPYKCDLCDYKATSSSQLNSHKKFRHSNEKEYKCDLCDYEGTTPYCLKSHKQYKHSGEKPYACDLCEYKGASSSLLKSHKKFKHSGDCKFKCEMCDYEGTTSYCLNSHKKYKHSTEKPYKCELCEYKSTTSYQLKSHVRFKHSTEKPYQCDLCDYKGTTAVCLKSHKQYRHSGEKPFKCDVCDYRGTTALCLKSHKKYRHSNEKPFKCDLCEYRGASNALLNSHKQFKHSNESKKYECDLCEYKCTTSSQLTKHRYNHFGEKPYKCDLCEYKGTSSSLLKSHKKFKHSNEKKYKCDLCDYQGTTSYCLKSHQNYKHSSEKPHKCDSCDYRCTSSSQLNSHKKFKHSSEKQYKCDLCAYEGTTPYCLKSHKKYKHDTVKQYKCDLCEYEGATSYCLKSHKQYKHSNEKPFKCDLCGYKGATALCLKSHKKYKHYSEKKFKCELCNYEGATPYCLKSHTRYKHSGEKCFKCDECPYEGTTSYCLKSHKQYKHSNEKPYKCDMCEYKGSSSALLNSHKQFKHSDEKPFQCPVCSYKCVRASNLKSHMYIHSETKPYKCYDCDYQCTQVRLLMQHIEKDHTGRQPYKCNICKCKCASHRQLRFHKQFKHLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258608;
- 90% Identity
- iTF_00466867; iTF_01258619; iTF_01258608;
- 80% Identity
- -