Pinq028642.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069878.1:30975359-30978256[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00059 0.037 15.4 1.7 2 23 367 389 366 389 0.97 2 11 0.053 3.3 9.3 0.6 1 23 395 417 395 417 0.98 3 11 3.2e-05 0.002 19.4 1.3 1 23 458 481 458 481 0.94 4 11 2.9e-06 0.00018 22.7 1.4 2 23 499 520 499 520 0.98 5 11 6.6e-05 0.0041 18.4 2.8 2 23 712 734 712 734 0.96 6 11 0.0022 0.14 13.6 6.5 1 23 740 762 740 762 0.98 7 11 0.0025 0.16 13.5 1.3 3 23 768 789 766 789 0.95 8 11 1.3 80 4.9 0.0 3 23 797 817 796 817 0.93 9 11 0.2 12 7.5 3.4 1 23 823 845 823 845 0.96 10 11 0.00012 0.0075 17.6 3.4 1 23 849 871 849 871 0.99 11 11 0.11 6.8 8.3 7.9 1 23 879 902 879 902 0.96
Sequence Information
- Coding Sequence
- atgttttacatATCAGATTTCTGTCACATATGCTTCAAATACGAAAACTCTCTGATAAACCTGAGCCAAAAAGAACCGGAAAACGCAGAGATCGTGTCCAAACTAATGCTGTGCGTTTCAGAAGTGGAATGGGCCCTCAACAAGAACTTTTGCATGTGTGACATTTGCCTGCAGAGATTAAACTCGGCTTACGAGTTCAAGCAACAGTGCATCAAATCGATAGAGACGCTCTCGAGGTATTTGCTCGAACAACAACAGGCGACGACCAGTGAATCGGATTTAGTTAAGAATGGAAACGCAGGAGGAGACGCTTCTCCAAATCAAAGGACAAAGGAGGATGTTTGTAAAGAACTGTTAAGGCTCGAAAGCGAGCCGCCGCAAACATCGAGGGTCAACATCGTAGTCCAACAACAGAATGTAGTGTTAGCGGCAGCGGAGCAGAATGCCCCCGCCGTATCCACCGAGCAGGCTTTCCCGGCGGAACAAAACTTTCCACCGCCCCCGGATCAAAACCTATCGGAATCAAGCGCACAGGGGCAAGGCCCTCCATCATCAGAACAACAACAAAAGATACTAACCCCCCTAACCAAACTGATTGTGACGAACACGAGTCAAGGCCCCTTCCAGAACATTTTCCTGAACTTAATCCCGACGAGCATGCTTAACTTGAACAGCTTGACGACTTCGGCGACCGCCCTCAGGGACGGCGCTCAGAACATGATTATATTCCCCGCCTTTCAAGCCACCAGGTCGGTCTTGAACAACAACGACGGCGAAATCAATGTCGCTCACCTCCTGGAAAACAGCAAGTCGGAAGAGCTCAGCATAGAAGCCGACCCGACGGTGTTCGATTGCACAAGCGAAGGCGGCGGCGACTCTGACAACGAAAGAGACTGGGACGAAGTGATTTCGTGCAATAAAATCGGCGGCGCGGATTCAGATGTCGGCTGCGGCGGTGGAGAAAGCATGCCGCTGGTCTTACCGACGAAAGTAAACAACGTTTACAACTCGGAGATAACCAACGAGGAGAAGATGGAGTTCTTCAACTTCGGCCACTTCCTGACGAACCCCCGGGTCAAAACCTACAACATGAACATGCAATGCGATATCTGCTCGCAGTGTTTCGACACGATTCGCTCGCTGCGTAATCACATCAAGGTCTCGCACGACAGTAACTTCCCCTACAAGTGCGGCTTGTGCCTGGCGGACTTTGCGCTGCTGAGCCACTACGAATCGCACATGGAGAAGCACACGTCGGATACCCTGCTCGGAAACTCCATCACATTAGATAACATCAAGCAGCAGAGCTCGGAGAGCTTCATCCACGTGGAGAACTACGAGTGCCACAGCAGCAGCGGCGGCGGCAAGGAGTACAAGTGTGATTTGTGCGGACGGAAGTTCACGACCTCGCAGGGTTTAATCCGGCACAAGGTGAGGCGGCATGACGAGCAGAAATCGCGGACGAAATACTTCGTGAAGGGCATGAAGAACGCCAAGTGCGACATATGCAATAGGTCGTTCTCAACGCAGTCGTATCTCCAGCTCCACCTCAAGCTGCACAATCGCAAGGGCGAGTGGAAGCGGAAGATCTACAACAAGGAAGAAGAAAAGGCGGAAGAGGACGCAGCCCCCAGCACGACGCAAGACGAAATGAAAGAGTCGAGTCCCCAGGAGGAAGCGAAGCTCACCGAGGAGGAAGACGACGAGCCGGAAAAAAAGGAAGACGAACTCACGGATCAAGAGGAAGACATGGCGACGACGAGTGATTTGAACGAGAGCACCCCCCCGACTACGACCGCCGAGGAAAATACCCCTAGCCCCGAGCAGGAGAATCGCAGCAGCATAAAAATCAAGATCAACTTGAAGGACATCATAAGAGTCCAGGAGGATTTCGGCAAGCCCACGGTTCAACAACCAAACCCAGACGACATGATGGACGTAACCTCCGATAAGTACAGCACGGATGAAAATGGTGAGTACAACATCGTTGAGCACTTCAAGTTTGCGAATTTCGAGGACCTCTCCATCCACGACGAGTCAAAGTTGGACACGATCTGTTTCTCTGAGGAGAACATCCAGTTGCAGAGTCAGAACGCGAGCGTTTTCAAATTCGAGTGGGTCAACGGCAAGCCCAAGTGCGTCTACTGCCAGAAGATGTTCGGCAGGAAGCACGATTTGAAGCGGCACATCAACAACGTGCACATGAAGTCGATCCAATACAAGTGCCACATTTGCAAGAGGAAATTCTACGAGGGTTTCCACTTGACGCGACACCTCCGGGGGCACTACAGCAGCCTGGCGTGTCCGCAGTGCAACAAGAAATTCTGCACCATCACCGACATCAAGAATCATCTCATGGTGTCTCACGATGGGATAGGCAATGTTGACTGCGGGGTCTGCAACATCTCCTTCGATGACCTGATGATTTTAAAGGATCACATCGAGGAGCACCTAAAGACCATCATCTACAAGTGTCACATCTGCAGCGACGAGTACAAGGAATGCCGTGATCTAACCAAGCACATCGTCGAGCACAGCGGAGTGTACACGTGTAGTCAATGCAATCGGAACTTCTGCACCGAAAAGGAACTCCTCTCGCACCTTCGGATACATTCCAGCGAGGTGAGTATGCGGCACAGGTGTGAAATATGCCAGAACACTTTCAAGAAGAAGCGCTACCTATACAGTCACTTGAAGAATTGCCATTCCATCGAGAAGCAGGACGCGGAGATTTTAATAGATACGGTCGTATGTGAGTATTCTAATCATTTGTAG
- Protein Sequence
- MFYISDFCHICFKYENSLINLSQKEPENAEIVSKLMLCVSEVEWALNKNFCMCDICLQRLNSAYEFKQQCIKSIETLSRYLLEQQQATTSESDLVKNGNAGGDASPNQRTKEDVCKELLRLESEPPQTSRVNIVVQQQNVVLAAAEQNAPAVSTEQAFPAEQNFPPPPDQNLSESSAQGQGPPSSEQQQKILTPLTKLIVTNTSQGPFQNIFLNLIPTSMLNLNSLTTSATALRDGAQNMIIFPAFQATRSVLNNNDGEINVAHLLENSKSEELSIEADPTVFDCTSEGGGDSDNERDWDEVISCNKIGGADSDVGCGGGESMPLVLPTKVNNVYNSEITNEEKMEFFNFGHFLTNPRVKTYNMNMQCDICSQCFDTIRSLRNHIKVSHDSNFPYKCGLCLADFALLSHYESHMEKHTSDTLLGNSITLDNIKQQSSESFIHVENYECHSSSGGGKEYKCDLCGRKFTTSQGLIRHKVRRHDEQKSRTKYFVKGMKNAKCDICNRSFSTQSYLQLHLKLHNRKGEWKRKIYNKEEEKAEEDAAPSTTQDEMKESSPQEEAKLTEEEDDEPEKKEDELTDQEEDMATTSDLNESTPPTTTAEENTPSPEQENRSSIKIKINLKDIIRVQEDFGKPTVQQPNPDDMMDVTSDKYSTDENGEYNIVEHFKFANFEDLSIHDESKLDTICFSEENIQLQSQNASVFKFEWVNGKPKCVYCQKMFGRKHDLKRHINNVHMKSIQYKCHICKRKFYEGFHLTRHLRGHYSSLACPQCNKKFCTITDIKNHLMVSHDGIGNVDCGVCNISFDDLMILKDHIEEHLKTIIYKCHICSDEYKECRDLTKHIVEHSGVYTCSQCNRNFCTEKELLSHLRIHSSEVSMRHRCEICQNTFKKKRYLYSHLKNCHSIEKQDAEILIDTVVCEYSNHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466845;
- 90% Identity
- -
- 80% Identity
- -