Dpar015098.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284477.1:29495207-29497955[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00058 0.054 15.4 1.8 2 23 347 369 346 369 0.96
2 11 0.032 3 9.9 1.1 1 23 375 397 375 397 0.98
3 11 2.5e-05 0.0023 19.7 1.2 1 23 438 461 438 461 0.94
4 11 2.7e-06 0.00025 22.8 1.4 2 23 479 500 479 500 0.98
5 11 6.1e-05 0.0056 18.5 2.8 2 23 681 703 681 703 0.96
6 11 0.002 0.19 13.7 6.5 1 23 709 731 709 731 0.98
7 11 0.0023 0.21 13.5 1.3 3 23 737 758 735 758 0.95
8 11 1.2 1.1e+02 5.0 0.0 3 23 766 786 765 786 0.93
9 11 0.18 17 7.6 3.4 1 23 792 814 792 814 0.96
10 11 0.00011 0.01 17.7 3.4 1 23 818 840 818 840 0.99
11 11 0.1 9.3 8.4 7.9 1 23 848 871 848 871 0.96

Sequence Information

Coding Sequence
ATGTTTTACATATCAGATTTCTGTCACATATGCTTCAAATATGAAAACTCTTTGATAAACCTGAGTCAAAAAGAAGCGGAAAACGCAGAAATTGTGTCCAAATTAATGTTATGTGTTTCTGAAGTGgAATGGACTGTAAACAAAAACTTTTGTATGTGTGATATTTGCCTGCAGAGATTAAATTCGGCGTATGATTTCAAACAACAGTGCATTAAATCAATAGAGACGCTTTCAAAGTATTTACTAGAACTACAAGGGACGAGTAAATCAGATTTAGTTAAAGGAAAATCAAGTACTTCTTTGACAAAGGAAGATATCTGTAAAGAACTGTTAAGTAAATACATAGAGTCACTTGGAGATGAACCACAAAAATCAAGGGTTAACGTCGTAGTTCCATCAACACAACAGAATTTAGTATTATCAGAGCAGAATGTATCGACAGAACAAAATATTCCACAACCACCATCGGATCAACAGTTGTCAACATCGGAACAAAACGCACAAAAGTCCCCTTCAGAACAAAAACTATTAACTCCTCTGACTAAATTAATAGTAACGAATTCGAGTCAAGGCCCatttcaaaacttttatttaaacttaattCCAACGAGCCTGCTTAACTTGAACAGTTTAACTTCTACAACTACTCTCAAGGATGGTGGTCAAAATATGTTGATTTTTCCCGCCTTTCAAGCTAGACCGGTCTTGAACAACAATGAAGGTGATATAAACATTTCTCATTTACTAGAAAATAGCAAAACGGAAGAGCTTAGCATAGAAGTAGATCCTACAGTATTCGATTATACAAGCGAGGCAGATTCAGATAATGAAAAAGACTGGGATGAAATTATTTCATGCAATAAAATTGGTGTAGATTTAGACAGTGTAGAAAGTTCCGAAAAGAACAATCAGGATAACCACGTACCGAAAGCAAACAGTGTTTATAATTCGGAGATAACAAATGAAGAGAAAATGGAGTTTTTTAACTTTGGCCACTTCCTTACAAATCCTAGAATAAAATCATACAACATGAACATGCAATGTGATATATGCTCTCAGTGTTTCGACACAATCCGTTCCTTACGTAATCACATAAAAATTTCACACGACGGGAACTTCCCATACAAATGCAGCCTGTGTTTGGCAGACTTTGCGCTGTTGAGCCACTACGAATCGCACATGGAAAAACACACATCAGACACTTTACTTGCAAATTCCATCACTTTGGATAATATCAAGCAGCAAAGTTCAGAGAGTTTTATACACGTGGAAAATTATGAGTGCCACAGTAACAGCGGCAACGGGAAGGAGTATAAATGTGATTTGTGTGGAAGGAGATTTACCACCTCGCAGGGATTGATCAGGCACAAAGTCAGAAGGCACGACGAGCAGAAAACCCGAACGAAATACTTCGTCAAGGGCATGAAGAATGCGAAATGCGATATATGCAACAGGTCTTTCTCCACACAGTCGTACTTGCAGCTTCACCTGAAACTGCACAGTCGCAAGGGCGAATGGAAGCGGAAGATTTACAACAAAGAAGAAAAGGTAGAAGAAGATGCAgcaaaattagaagaaacgAAAGAATTGACTCCTCAGGAAGAAGCGAAGCCTGCCGAAGAAGAACAAGAACCGGAAAAAAAAGAAGATGAAGTGTCGGATCACGAAGAAGATATGGAGAGTGATTTAAACGAAAATACTTCGTTCGTGACTACTGAAAATACGCCTAGTCCGGAGGAAGAGAATCGCAGCagcataaaaattaaaatcaacttGAAAGACATTATAAGAGTCCAGGAAGATTTCAACAAACCACTTCAAGCTAATCCAGAAGATATGATGGAAGTAACTTCTGATAAATACAGCACGGATGAGAATGGTGAGTACAACATTGTGGAACACTTCAAGTTCGCCAATTTCGACGAACTATCAATTCACGACGAGTCGAAGTTGGATACAATTTGTTTTTCCGAAGATAATATCCAGCTCCAGAGTCAAAATTCGAGCGTGTTCAAATTTGAGTGGGTCAACGGCAAGCCTAAGTGCGTGTACTGCCAGAAAATGTTTGGTAGAAAGCACGATTTGAAACGACACATAAATAATGTGCACATGAAATCAATCCAGTACAAATGCCACATTTGTAAGAGGAAATTCTACGAGGGTTTCCATCTAACACGACATCTGAGAGGGCACTACAGTAGTCTGGCATGTCCACAATGCAATAAAAAGTTTTGTACCATTACCGATATAAAAAACCACCTCATGGTGTCTCACGATGGCATAGGCAACGTTGACTGCGGAGTGTGTAACATCTCCTTTGATGATTTGATGATTTTGAAGGATCACATCGAGGAGCATTTAAAGACGATCATTTACAAGTGTCATATCTGCAGTGATGAATATAAAGAATGCCGAGATTTGACGAAGCACATCGTCGAGCACAGTGGAGTGTATACGTGTAGTCAATGTAATCGAAATTTCTGCACTGAAAAGGAATTGCTCTCGCACTTGAGAATACATTCCAGTGAAGTAAGTATGAGGCACAGATGTGAAATTTGTCAGAACACTTTTAAGAAGAAGCGCTATTTATACAGTCACTTGAAGAATTGCCATTCCATTGAGAAACAAGATGCAGAAATTTTAATAGATACGGTTGTATGTGAGTATTCTAATCATTTGTAG
Protein Sequence
MFYISDFCHICFKYENSLINLSQKEAENAEIVSKLMLCVSEVEWTVNKNFCMCDICLQRLNSAYDFKQQCIKSIETLSKYLLELQGTSKSDLVKGKSSTSLTKEDICKELLSKYIESLGDEPQKSRVNVVVPSTQQNLVLSEQNVSTEQNIPQPPSDQQLSTSEQNAQKSPSEQKLLTPLTKLIVTNSSQGPFQNFYLNLIPTSLLNLNSLTSTTTLKDGGQNMLIFPAFQARPVLNNNEGDINISHLLENSKTEELSIEVDPTVFDYTSEADSDNEKDWDEIISCNKIGVDLDSVESSEKNNQDNHVPKANSVYNSEITNEEKMEFFNFGHFLTNPRIKSYNMNMQCDICSQCFDTIRSLRNHIKISHDGNFPYKCSLCLADFALLSHYESHMEKHTSDTLLANSITLDNIKQQSSESFIHVENYECHSNSGNGKEYKCDLCGRRFTTSQGLIRHKVRRHDEQKTRTKYFVKGMKNAKCDICNRSFSTQSYLQLHLKLHSRKGEWKRKIYNKEEKVEEDAAKLEETKELTPQEEAKPAEEEQEPEKKEDEVSDHEEDMESDLNENTSFVTTENTPSPEEENRSSIKIKINLKDIIRVQEDFNKPLQANPEDMMEVTSDKYSTDENGEYNIVEHFKFANFDELSIHDESKLDTICFSEDNIQLQSQNSSVFKFEWVNGKPKCVYCQKMFGRKHDLKRHINNVHMKSIQYKCHICKRKFYEGFHLTRHLRGHYSSLACPQCNKKFCTITDIKNHLMVSHDGIGNVDCGVCNISFDDLMILKDHIEEHLKTIIYKCHICSDEYKECRDLTKHIVEHSGVYTCSQCNRNFCTEKELLSHLRIHSSEVSMRHRCEICQNTFKKKRYLYSHLKNCHSIEKQDAEILIDTVVCEYSNHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00465387; iTF_01258541;
90% Identity
iTF_00465387;
80% Identity
-