Pinq024227.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prosopocoilus inquinatus
Gene Symbol
-
Assembly
GCA_036172665.1
Location
CM069876.1:46984562-46992773[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.00035 0.022 16.1 3.3 1 23 10 32 10 32 0.97
2 30 0.0059 0.37 12.3 5.3 1 23 38 60 38 60 0.98
3 30 0.052 3.3 9.3 5.4 2 23 67 88 66 88 0.95
4 30 0.047 2.9 9.5 1.8 1 23 95 117 95 117 0.96
5 30 0.01 0.65 11.5 4.4 1 23 123 145 123 145 0.98
6 30 0.017 1.1 10.8 0.6 2 21 153 172 152 173 0.93
7 30 0.005 0.31 12.5 2.9 1 23 201 223 201 223 0.97
8 30 0.0041 0.26 12.8 0.3 2 23 232 253 231 253 0.97
9 30 3.8e-05 0.0024 19.2 1.2 1 23 299 321 299 321 0.98
10 30 0.0065 0.4 12.2 6.1 1 23 327 349 327 349 0.98
11 30 0.13 7.8 8.1 2.0 2 23 356 377 355 377 0.96
12 30 0.016 1 10.9 5.5 1 23 384 406 384 406 0.98
13 30 0.00028 0.018 16.4 2.2 1 23 412 434 412 434 0.98
14 30 0.045 2.8 9.5 3.3 1 23 441 463 441 463 0.97
15 30 0.0033 0.21 13.1 2.2 1 23 490 512 490 512 0.97
16 30 0.0041 0.26 12.8 0.3 2 23 521 542 520 542 0.97
17 30 0.00027 0.017 16.5 1.6 1 23 585 607 585 607 0.97
18 30 0.27 17 7.1 2.7 3 23 615 635 613 635 0.98
19 30 0.0011 0.069 14.6 2.0 2 23 642 663 641 663 0.97
20 30 0.011 0.71 11.4 3.6 3 23 671 691 669 691 0.98
21 30 0.059 3.7 9.1 2.2 2 23 698 719 697 719 0.96
22 30 0.064 4 9.0 4.9 1 23 726 748 726 748 0.97
23 30 0.0049 0.31 12.5 4.1 1 23 754 776 754 776 0.98
24 30 0.32 20 6.8 3.2 1 23 784 806 784 806 0.97
25 30 0.033 2 10.0 4.0 1 23 824 846 824 846 0.95
26 30 0.0012 0.078 14.4 0.5 2 23 854 875 853 875 0.97
27 30 0.00028 0.018 16.5 3.4 1 23 883 905 883 905 0.98
28 30 0.5 31 6.2 4.5 3 23 913 934 913 934 0.98
29 30 0.00073 0.046 15.1 2.8 1 23 942 964 942 964 0.98
30 30 0.00044 0.027 15.8 0.4 1 23 970 992 970 992 0.98

Sequence Information

Coding Sequence
ATGTTAACAcccaccgacgagaagccgttcatcTGCGACATTTGCGACTATAGGTGTCGGTACAAGGGAAACCTGCAACAGCACAAGTCGACGCACACGAGAGAGAGGCGGTTCAGctgcgacctctgcgattataagtgccggtTTAACAAGAACTTGCAGCAGCACAAGTTGACGCACACGGGTGAGAAGCCGTTGAATTGCggcctttgcgattacaaatgccgacagcTTACGCACTTGAAACTGCACATGTTTAAACACACCGGcagcgagaaaccgttcagttgtaaaCTATGCGATTACAAGTGCTTGCAGGCCGTGAATCTGAGGCGGCACGAGTTAATTCAcacgggcgagaagccgttcagctgtgacGTGTGCAGTTACAAGTGTCGACAATATTCGCGTTTGAGAGAGCACATGCTGAAACACACCGGCGGCGAGAAACCACAGAGTTGCAAAAATTGCGCTTACAAGTTCCGTTATAGTGGGGACATGAAACGTCACATTTTGAGACGTACCGGCGAAAAGCCCACTCGTTCGGACGAGGAACAATTGACGGCGAAGCGAGTGCAAACTTATACGGTTGAGGAGCGGTTCTGCTGCGGCGTTTGCAGTTACAAGAGTCGACAAGCCTCGCATTTGACGGCGCACTTATCCgtacataccggcgagaaaccgaaACCGATCAAATGTGGCGTTTGCGATTTCAGTTGTGAACAAATCGCGGATTTGAAGGCGCACGTTCAAACTCATGCCGTCGAAAAACCGTTTGGTTGTAACCTgAATCATCGGACTTCGAAAAACCAACCGAAGAACAAATCGAGCAAAATCCTAGACCCCGCCGCTGGTGTGAAACGTCGCAGGTCGACACCTACCGGTGAAAATCCATTCACTTGCGAGCTTTGCCCCTACAAAAGTCGAACGAGCGGAACTCTGAAAAGGCACatgttaacgcacaccgacgagaagccgttcagttgtgatcgttgcgattataaatgccggttCAAGACCAACCTGCAACAGCACCGGCTAACGCACACGGGAGAGAAGCCCTTGATTTGCGGCctctgcgattttaaatgtcgGCAAACCGCGAAGATGAAAGTGCACATGCTGAAACACACCggcggcgagaagccgttcagttgtaaactgtgcgattacaagtgcTGTCAAGCTGTGAATATGAGACGGCACGAGTTGACTCACACGGGCGAAAAGCCGTACAGTTGCGACGTGTGCGGTTACAAATGCCGGCAATCCGCGCGTTTGAGGGAGCACATGCTGAAACACACCGGCGGCGGTAAACGGCACAGTTGCAAATATTGCGCTTACAAGTCCCGTTATAGCGGGGACATGAAACGTCACATTTTGAGACACACCAGCGAAGAGTCCACTCGTTCGGACGATGAACAATTGACAGCGAAGCGCGTGCAAACTTGTACGGTTGAGAAGAGGTTCTGCTGCGGCGTTTGCAATTACAAGGGTCGACAAGCGTCGCATTTGACGGCGCACTTATCCgtacataccggcgagaaaccgaaACCGATCAAATGTGGCGTTTGCGATTTCAGCTGTGAACAAATCGCGGATTTGAAGGCGCACGTGCAAACTCACGCCATCGAAAAACCGTTTGGTTGTAACCTatgGCGTCGGACGTTGAACACCCAACCGGAAAATGACGTAACGACCAAATTTCAAGACGTCACCAAAGTGAAGCGAAGCGTATTaagcgagaagccgttcgcttgCAAACTTTGCCCCTACAAATGCCGACAGAGCGGAAACTTAAAAATACACGtgctaacgcacaccgacgacaagccgttcggttgcgacctctgcgattacaagtgccgatTAAGCGCGCGCTTAAAACAGCACAGGTTAACGCACACGACCGAAAAGCCGTTGACCTGCAGCATTTGCGGTTACAAATGCCGCCAGACCGGAGGAATGAAACAGCACAtgctaacgcacaccgacgagaaaccgttcggctgCGACATTTGCGACTACAGGTGCCGGCTGAAGAGAAACTTGCGCCAGCATAAGCTAACGCACACGGGGGAAAAGCCGTTGATCTGCGGCCTTTGCGATTTCAAATGCCGGCAAAGCGCGAAGATGAAGCTGCACATGTTGAAACACACGggcggcgagaaaccgttcgcttGCAAgttttgcgattacaagtgctgTCAAGCCGTCGACATGAGGCGGCATGAGCTGACGCACACGGGCgaaaaaccgttcagttgtgatctgtgcgattataaatgtcggcaATCCACGGGTTTGAGGCAGCACAGGTTGAAACACACAGGCGGCGGCGAAAAGCGATACAGTTGTGATTACTGCGGTTACAAGGCCCATCACAACGGAGTTATGAAGCGTCACGTTTTAAGACATGCCATCCGGGACTCCACTGGTGCCGACGAGAAACATTTGGCGACGAAGCCGTTCTGTTGCGGCGTTTGCAATTACAAGGGTCGGCAGGCCTCACATTTGACGGCGCACCTGCACGCCCATACCGGTGAGAAACCGGTGATCAAATGTGGCGTTTGCGATTTCAAGTGTGAGCAGGTCGCAGATTTGAAGGCGCACATGCAGACTCACGCAGGCGCAGTCGAGAAGACGTATAGCTGTGAGCTCTGCGATTTCCAGTGTCGGCGACTCTCAAATTTGACGACGCACATGTCGAGTCACGCCGGCGAGAAGCCGCttggttgtgatctttgcgactTCAGATGTCAACTGCGCGCGCATTTGATGGTACACATGCGCCGCACTCACGCCGTCGCCGTCGCGAAGGCGTTCAGCTGCGATCTCTGCGACTTCAAGTGTCAACAAGCCGCGTATTTGACGACGCACATGCGCACTCACACCGGCGAGATGCCGTTCAGTTGCGAGCTTTGCGATTTCACGAGTGAACAACGCGCAGATTTGTCGACGCACATTCGAACTCACACACACAACGACTTGCTGCATCGCATGCCGAAGAAGGATAAGAAGATTAAATGA
Protein Sequence
MLTPTDEKPFICDICDYRCRYKGNLQQHKSTHTRERRFSCDLCDYKCRFNKNLQQHKLTHTGEKPLNCGLCDYKCRQLTHLKLHMFKHTGSEKPFSCKLCDYKCLQAVNLRRHELIHTGEKPFSCDVCSYKCRQYSRLREHMLKHTGGEKPQSCKNCAYKFRYSGDMKRHILRRTGEKPTRSDEEQLTAKRVQTYTVEERFCCGVCSYKSRQASHLTAHLSVHTGEKPKPIKCGVCDFSCEQIADLKAHVQTHAVEKPFGCNLNHRTSKNQPKNKSSKILDPAAGVKRRRSTPTGENPFTCELCPYKSRTSGTLKRHMLTHTDEKPFSCDRCDYKCRFKTNLQQHRLTHTGEKPLICGLCDFKCRQTAKMKVHMLKHTGGEKPFSCKLCDYKCCQAVNMRRHELTHTGEKPYSCDVCGYKCRQSARLREHMLKHTGGGKRHSCKYCAYKSRYSGDMKRHILRHTSEESTRSDDEQLTAKRVQTCTVEKRFCCGVCNYKGRQASHLTAHLSVHTGEKPKPIKCGVCDFSCEQIADLKAHVQTHAIEKPFGCNLWRRTLNTQPENDVTTKFQDVTKVKRSVLSEKPFACKLCPYKCRQSGNLKIHVLTHTDDKPFGCDLCDYKCRLSARLKQHRLTHTTEKPLTCSICGYKCRQTGGMKQHMLTHTDEKPFGCDICDYRCRLKRNLRQHKLTHTGEKPLICGLCDFKCRQSAKMKLHMLKHTGGEKPFACKFCDYKCCQAVDMRRHELTHTGEKPFSCDLCDYKCRQSTGLRQHRLKHTGGGEKRYSCDYCGYKAHHNGVMKRHVLRHAIRDSTGADEKHLATKPFCCGVCNYKGRQASHLTAHLHAHTGEKPVIKCGVCDFKCEQVADLKAHMQTHAGAVEKTYSCELCDFQCRRLSNLTTHMSSHAGEKPLGCDLCDFRCQLRAHLMVHMRRTHAVAVAKAFSCDLCDFKCQQAAYLTTHMRTHTGEMPFSCELCDFTSEQRADLSTHIRTHTHNDLLHRMPKKDKKIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01258867;
90% Identity
iTF_01258867;
80% Identity
iTF_01258867;