Pinq026970.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069878.1:1566948-1571940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0093 0.58 11.7 3.5 2 23 168 189 167 189 0.96 2 16 5.5e-05 0.0034 18.7 4.2 1 23 194 216 194 216 0.98 3 16 0.00042 0.026 15.9 4.0 1 23 222 244 222 244 0.96 4 16 0.00064 0.04 15.3 0.6 3 22 252 271 250 271 0.95 5 16 0.00015 0.0094 17.3 0.7 1 23 278 300 278 300 0.95 6 16 0.00018 0.011 17.1 0.1 1 23 478 500 478 500 0.98 7 16 1.6e-05 0.001 20.4 5.6 1 23 506 528 506 528 0.97 8 16 3.6e-05 0.0023 19.2 6.3 1 23 534 556 534 556 0.98 9 16 0.0054 0.34 12.4 0.5 1 23 562 585 562 585 0.95 10 16 0.016 0.98 10.9 0.6 1 23 597 619 597 619 0.98 11 16 2.4e-05 0.0015 19.8 3.5 1 23 625 647 625 647 0.97 12 16 3.6e-06 0.00023 22.4 0.5 1 23 654 676 654 676 0.96 13 16 4.7e-06 0.00029 22.0 1.2 1 23 682 704 682 704 0.98 14 16 2.4e-06 0.00015 23.0 0.5 3 23 712 732 710 732 0.96 15 16 1e-05 0.00064 21.0 0.1 1 23 738 760 738 760 0.99 16 16 7.3 4.6e+02 2.5 0.4 1 23 765 788 765 788 0.90
Sequence Information
- Coding Sequence
- ATGGAGCGCGAGGAGCTCGATTTAAATCGCGTGTGCCGCGCCTGCAAGAACGAGTCCCCCGACATGCGTCCGTTGTTCTCGCCCGACTCCGAAACCGCCAAAGAGAATCCCCGAATTGACGAGATGCTAATGGCTTGCGCCTCCGTCCAGGTTAGTTGCGAGGACGCCCTGCCCAAGTCGATATGCTGCACGTGCGTCCAACAGCTCAAGAGCGCCTTCAGCTTCAAGTCGCTCTGCGAAAAAACCGACGCCTGCCTCAGGGAGCACGTCAGGAACATGAAAGAACAGCGCCAGATTAAGACCGAGGACTTGCTGGCGGCTCAGGGCCTCGATAATTCGCAGCAGGGCCTATTCGGCCCCACGTTCGATGACATCATCGAGAAAGAGAAGAAGGAAGAGGGCGACAGCGTCAAGGACGAGACGGAATCCCAGTCGGAGGGGTGCGAGCCGAAAGTCAAGTGGGATTACATTCAGCTGTTGGACAACAACATGATGCTGCTGACGTGCAAGACGTGCTCGAAAGTCTTCACGACCTTGGACGGCCTGAAATGTCACAAGCGCATTCACACCGGCGCCCTCTTCAAGTGCAAACAGTGCGATAAGGAGTACACGAGGTTGAATCACCTGCAGAGGCACGAGCTGTCGCACGGGAGGCGCAAGATACACGTTTGCAAAATATGCAGCAAAACGCTGACGAGGTTCGACCACCTGAAGCGCCACCTGGTGATACATTTGAAGGAGAAGCCGTTCGGCTGTCAGACCTGCAATCGGGGCTTCAATCGAGCCGAACACTTGGCCAATCACATGAACCGTTGCAACGGCGAACGGGTGCACGTCTGTGATATCTGCAACAAAGGCTTCAATCGTGAGGACAGCCTCGAAGTGCACAAGACCCTGCACGGGGAGAAGAGGCCGGACCTCCCGACCCTCGAGAACCTCGACAACATCGAGGAGCACTACGTCGAACTGGACATCGACGACAACGCGACCTTCTCCGACGCCTCCGACTTCGAGGAGATGGACGACCCCGAGTGCATGGAGCCGCAGATCGACATCGCCGAGCCAGACAAGCTCCAGAGTTTGGCCGCGACGATTTACGCGGAGGAGGACCCCCAGGAACTCCTGGAGGAGAAGGCGAAGATCGAGGAGCAGATGATTTTCGGCGGGGAGGACAAGGATGCCggtggtgatgatgatgatgacgaagaggacgacgacggcgacgtgCAGGAGACTTTGGAAATCGCCCCCGCCGAAGACTCGGATAGCACGCACTCGGAGTACCTCCCGGCGAAGCCACCGCCGAAGATCAAGCGGGGTCGGGGGAGACCCCGGAAGTATCCGCTGACGCCGGTGAAGAAGAAAACCAGGGGACGTCCGGCGTTGATGAAAATCAAGTCGGAGCCGGAGGACGACGACGTGCTGGGGGAGTTCACCTGCCCCGAGTGTAATCTGGTGTTCCCCCGGATGAGCGTCCTGGAGAAGCACGCGCAGATCCACGACGGCCTCAAGTTGCACAGTTGCGAAACGTGCGAGAAGAAATTCTCGCGCGCGAACCACCTGAAGCGGCACATGCTGAGCCACTCGGAGGTTAAGCCGTACGTCTGCGACATCTGCACGAAGTGTTTCAACCGGAGGGACCACCTCCAGCAACACAAGAAGCTGCACGCGAGGACGCAGGACTACGAGTGCGCCATCTGCAAGCGCCTCTTTTACCGGTCGGAATTTCTCGCGAAGCACGTCGCGTCCAAGCACGGCATCGGGGAGAAGGTGGTCGGTGAGAAGAAGTACAAGTGTCCGGTGTGCATGAAGGGCTTCACCACCGAAAAGTACAGGGACGTTCACATGAAGGCGCACGCGGGTGATAAAAAGTTTCAGTGCAAGACTTGCGACAAGGCGTTCATCTCCAAGTCGCACCTGGTGGAGCACACCAAGTTCCACAATGACAATTCCAAGAAGTTCTTGTGCTCGGAGTGCGGGCAGAGGTTCATCCGGAACGACTACCTCGTCATTCACATGCGGCGGCATCGCGGCGAAAAACCGTTCAAGTGCAAATACTGCGGCAAGGGGTTTCCCCGGACCACCGACCTCACAGTGCACGAACGATATCACACGGGTGAGAAGACGCACCTTTGCGTCATATGCGGAAGGGGGTTCGGAAGGGCGTACAATTTAACGGTGCACATGCGcacgcacaccggcgaaaaaccCTACCAGTGCACGTACTGTGACGCCGCTTTCGCGCAAGGAAACGACCTCAAGGCCCACATCCGACGCCACACCGGCGAAAGGTTCCAGTGCGAACTGTGCTCGGATACGTTCCTGATGGGGTATTTGTTAACGCAGCACAAGAGGGTGGTACACGGGTTGAATGTCGTAAGTAACATCAGACGGCTTCAGCCGATCAGTAAAATGAACCAGAACGATCCGGACGATCCCCCGCCGATCACGATCCCCCTGCCAGTGCCTGTCGTGCCGCAAGCGATCTTAAACACGCAGATCCAAGCGCAGCTCACCACCGCGGCTCAGCTGCAAGAATAG
- Protein Sequence
- MEREELDLNRVCRACKNESPDMRPLFSPDSETAKENPRIDEMLMACASVQVSCEDALPKSICCTCVQQLKSAFSFKSLCEKTDACLREHVRNMKEQRQIKTEDLLAAQGLDNSQQGLFGPTFDDIIEKEKKEEGDSVKDETESQSEGCEPKVKWDYIQLLDNNMMLLTCKTCSKVFTTLDGLKCHKRIHTGALFKCKQCDKEYTRLNHLQRHELSHGRRKIHVCKICSKTLTRFDHLKRHLVIHLKEKPFGCQTCNRGFNRAEHLANHMNRCNGERVHVCDICNKGFNREDSLEVHKTLHGEKRPDLPTLENLDNIEEHYVELDIDDNATFSDASDFEEMDDPECMEPQIDIAEPDKLQSLAATIYAEEDPQELLEEKAKIEEQMIFGGEDKDAGGDDDDDEEDDDGDVQETLEIAPAEDSDSTHSEYLPAKPPPKIKRGRGRPRKYPLTPVKKKTRGRPALMKIKSEPEDDDVLGEFTCPECNLVFPRMSVLEKHAQIHDGLKLHSCETCEKKFSRANHLKRHMLSHSEVKPYVCDICTKCFNRRDHLQQHKKLHARTQDYECAICKRLFYRSEFLAKHVASKHGIGEKVVGEKKYKCPVCMKGFTTEKYRDVHMKAHAGDKKFQCKTCDKAFISKSHLVEHTKFHNDNSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFQCELCSDTFLMGYLLTQHKRVVHGLNVVSNIRRLQPISKMNQNDPDDPPPITIPLPVPVVPQAILNTQIQAQLTTAAQLQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466617;
- 90% Identity
- -
- 80% Identity
- -