Dpar012844.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284477.1:9019913-9028718[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0087 0.8 11.7 3.5 2 23 170 191 169 191 0.96
2 16 5.1e-05 0.0047 18.7 4.2 1 23 196 218 196 218 0.98
3 16 0.00039 0.036 15.9 4.0 1 23 224 246 224 246 0.96
4 16 0.0006 0.055 15.4 0.6 3 22 254 273 252 273 0.95
5 16 0.00011 0.0099 17.7 0.6 1 23 280 302 280 302 0.95
6 16 0.00013 0.012 17.5 0.1 1 23 461 483 461 483 0.98
7 16 0.00013 0.012 17.4 5.5 1 23 489 511 489 511 0.97
8 16 5.8e-05 0.0053 18.6 7.1 1 23 517 539 517 539 0.96
9 16 0.0051 0.47 12.4 0.5 1 23 545 568 545 568 0.95
10 16 0.015 1.4 11.0 0.6 1 23 580 602 580 602 0.98
11 16 2.3e-05 0.0021 19.8 3.5 1 23 608 630 608 630 0.97
12 16 3.4e-06 0.00032 22.4 0.5 1 23 637 659 637 659 0.96
13 16 4.4e-06 0.0004 22.1 1.2 1 23 665 687 665 687 0.98
14 16 2.2e-06 0.0002 23.0 0.5 3 23 695 715 693 715 0.96
15 16 9.6e-06 0.00089 21.0 0.1 1 23 721 743 721 743 0.99
16 16 6.9 6.3e+02 2.6 0.4 1 23 748 771 748 771 0.90

Sequence Information

Coding Sequence
ATGGACCGCGAGGAGCTCGATTTTAATCGCGTGTGCCGCACCTGCAAGAACGAGTACCCCGAGATGCGTTCGTTGTTCTCGCGCGACTCCGAAAGCGGCAAAGAAAATCCCCGTATTGACGAGATGCTAATGGCTTGCGCCTCCGTGCAGGTTAGCTCCGAGGACGGCCTGCCCAAGTCGATATGCCGCACGTGCATCCAACACCTCAAGACTGCGTTCAATTTCAAGGCACTCTGCGAACGAACGGACGCCTGCCTCAGAGAACACATCAAAAACCTGAAAGACCAGCAGCAGCGCCAGATTAAGACGGAGGACGCCTTGGTGCAGGCCCTGGATAATTCGCATTCACATTCACAGAGTTTATTCAGCCCCATATTCGATGACATCATCGATAAGGACAAGGAAGAGGGTAGTGTCAAGGACGAGATGGAGCCCCAGTCGGAGGGGTGCGAGCCCAAAGAGAAGTGGGACTACATTCAACTGTTGGACAATAACATGATGTTGCTGACGTGCAAGACGTGCTCGAAGGTCTTCACGACCTTGGACGGTCTGAAGTGTCACAAGCGCATTCACACGGGGTCCCTTTTCAAGTGTAAACAGTGCGATAAGGAGTACACGAGGCTGAATCACCTGCAGAGGCACGAACTGTCGCACGGGAGGCGTAAGATACACGTTTGTAAGATATGCAGCAAGACGCTGACGAGGTTCGATCACCTGAAGCGACACCTGGTGATACATTTGAAGGAGAAGCCGTTCGGGTGTCAGACCTGTAACCGGGGGTTCAACCGCGCGGAGCACCTGGCCAATCACATGAACCGTTGCACCGGCGAGAGGGTACATGTGTGTGACATCTGCAACAAAGGCTTTAATCGTGAGGATAGCCTCGAAGTGCACAAGAGCCTGCACGGGGAGAAACGACCCCTCCTGCCGACCCTGGAAAACCTCGACAACATCGAGGAGCACTACGTCGAGCTGGACATCGATGACAACGCGACTTTCTCCGACGCCTCCGACTTCGAAGACATGGACGATGCCGATTGTATCGAGCCTCAAATTGACATCGCCGAATCGGAGAAGCTCCAGAATTTGACCGCGACGATTTACGCAGAGGAGGACCCCCCGGAGCTCCTCGAGGAAAAAGCGAAAATCGAAGAGCAGATTTTGGGCGCCGAGAACGTGCAGGAGACTTTCGAAATCGCCCCCGCCGAAGACTCGGACAGCACCCACTCGGAGTACCACCCGAGGAAGCCGTCCCCGAAGATCAAACGGGGCCGGGGAAGGCCCCGGAAGTATCCGCCGGCGAAGAAGAAGAAACCCAGGGCTCGCCCCGTGCTGATGAAAGTCAAATCGGAACCGGAAGACGACGACGTCTTGGGCGAGTACACCTGCCCCGAGTGCAACCTGGTGTTCCCCAGGATGAGCGTCCTGGAAAAGCACGCGCAGATACACGAGGGGTTCAAGCTGCACAGTTGCGACACCTGCGAGAGAAAATTCACGCGCGCGAACCACTTGAAACGCCACCTGCTGAGTCACTCTGAGGTTAAACCGCACATCTGTGACGTCTGCGGAAAGTGTTTCAACCGAAGGGACCACCTTCAACAACACAAGAAGCTGCACGCGAGGACGCAGGATTACGAGTGCGCCATTTGCAAACGCCTCTTTTACCGTTCCGAGTTCCTCGCGAAGCACGTAGCGTCCAAACACGGCATCGGGGAGAAGGTGGTCGGCGAGAAGAAGTACAAGTGTCCGGTCTGCATGAAGGGTTTCACCACCGAAAAGTACAGGGACGTCCACATGAAGGCGCACGCGGGTGATAAAAAGTTTCAGTGCAAGACTTGCGACAAGGCGTTCATTTCGAAGTCGCACCTCGTCGAACACACCAAGTTCCACAATGACAATTCCAAGAAGTTCTTGTGCTCCGAGTGCGGGCAGAGGTTCATCCGGAACGACTACCTCGTTATTCACATGCGGCGGCATcgcggcgagaaaccgttcaagTGTAAATACTGCGGCAAGGGGTTTCCCCGAACCACCGACCTCACAGTGCACGAACGGTATCACACGGGCGAGAAAACACATCTCTGCGTCATATGCGGGAGGGGTTTCggaagGGCGTACAATTTAACTGTGCACATGCGTacacacaccggcgaaaagcccTACCAATGTACGTATTGTGACGCCGCTTTTGCGCAAGGCAACGACCTCAAGGCCCACATCCGACGGCATACCGGTGAAAGATTCCAGTGCGAGCTATGCTCAGATACGTTCTTGATGGGGTACTTGTTAACACAGCATAAGAGAGTAGTGCACGgcTTGAATGTCGTAAGTAATATCAGACGGTTGCAGCCGATTAGTAAAATGAATCAAAACGATCCCGATGATCCCCCGCCGATCACGATTCCACTGCCAGTGCCTGTCGTACCGCAAGCGATCTTAAACACACAGATTCAAGCCCAACTTACCACCGCGGCTCAGTTGCAAGAATAG
Protein Sequence
MDREELDFNRVCRTCKNEYPEMRSLFSRDSESGKENPRIDEMLMACASVQVSSEDGLPKSICRTCIQHLKTAFNFKALCERTDACLREHIKNLKDQQQRQIKTEDALVQALDNSHSHSQSLFSPIFDDIIDKDKEEGSVKDEMEPQSEGCEPKEKWDYIQLLDNNMMLLTCKTCSKVFTTLDGLKCHKRIHTGSLFKCKQCDKEYTRLNHLQRHELSHGRRKIHVCKICSKTLTRFDHLKRHLVIHLKEKPFGCQTCNRGFNRAEHLANHMNRCTGERVHVCDICNKGFNREDSLEVHKSLHGEKRPLLPTLENLDNIEEHYVELDIDDNATFSDASDFEDMDDADCIEPQIDIAESEKLQNLTATIYAEEDPPELLEEKAKIEEQILGAENVQETFEIAPAEDSDSTHSEYHPRKPSPKIKRGRGRPRKYPPAKKKKPRARPVLMKVKSEPEDDDVLGEYTCPECNLVFPRMSVLEKHAQIHEGFKLHSCDTCERKFTRANHLKRHLLSHSEVKPHICDVCGKCFNRRDHLQQHKKLHARTQDYECAICKRLFYRSEFLAKHVASKHGIGEKVVGEKKYKCPVCMKGFTTEKYRDVHMKAHAGDKKFQCKTCDKAFISKSHLVEHTKFHNDNSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFQCELCSDTFLMGYLLTQHKRVVHGLNVVSNIRRLQPISKMNQNDPDDPPPITIPLPVPVVPQAILNTQIQAQLTTAAQLQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00465190; iTF_01258313;
90% Identity
iTF_00465190;
80% Identity
-