Pinq024263.1
Basic Information
- Insect
- Prosopocoilus inquinatus
- Gene Symbol
- -
- Assembly
- GCA_036172665.1
- Location
- CM069876.1:47394360-47397617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00026 0.016 16.5 2.4 1 23 18 40 18 40 0.98 2 31 0.00082 0.051 15.0 3.6 1 23 46 68 46 68 0.98 3 31 0.025 1.6 10.3 3.6 3 23 76 96 74 96 0.98 4 31 0.0029 0.18 13.2 2.1 2 23 101 122 100 122 0.95 5 31 0.0073 0.45 12.0 6.0 1 23 128 150 128 150 0.98 6 31 0.0036 0.23 13.0 3.2 1 23 156 178 156 178 0.98 7 31 0.02 1.2 10.6 5.9 1 23 184 206 184 206 0.98 8 31 0.00057 0.035 15.5 0.7 2 23 213 234 212 234 0.96 9 31 0.0028 0.18 13.3 2.7 2 23 271 292 270 292 0.97 10 31 0.014 0.87 11.1 3.6 3 23 300 320 298 320 0.97 11 31 0.0073 0.46 12.0 1.5 2 23 327 348 326 348 0.96 12 31 0.00038 0.024 16.0 3.0 2 23 355 376 354 376 0.97 13 31 0.002 0.12 13.8 1.8 3 23 384 404 382 404 0.98 14 31 0.036 2.3 9.8 1.0 1 20 410 429 410 430 0.96 15 31 1.9 1.2e+02 4.4 0.1 10 23 461 474 458 474 0.84 16 31 0.019 1.2 10.7 1.9 1 23 480 502 480 502 0.97 17 31 0.031 2 10.0 3.0 3 23 510 530 508 530 0.98 18 31 6.1e-06 0.00038 21.7 2.4 1 23 536 558 536 558 0.98 19 31 0.0039 0.25 12.8 0.2 1 23 564 586 564 586 0.98 20 31 0.012 0.78 11.3 4.8 1 23 592 614 592 614 0.98 21 31 0.37 23 6.6 3.0 1 23 620 642 620 642 0.94 22 31 8.1e-06 0.0005 21.3 1.0 3 23 650 670 648 670 0.98 23 31 0.0009 0.057 14.9 1.1 2 23 677 698 676 698 0.96 24 31 0.0005 0.031 15.7 0.3 1 23 704 726 704 726 0.99 25 31 1e-07 6.3e-06 27.3 1.3 2 23 733 754 732 754 0.97 26 31 0.0014 0.085 14.3 1.0 1 23 760 782 760 782 0.97 27 31 0.0096 0.6 11.6 4.0 1 23 788 810 788 810 0.98 28 31 0.051 3.2 9.3 2.3 1 23 816 838 816 838 0.97 29 31 0.0014 0.086 14.3 2.0 1 23 844 866 844 866 0.98 30 31 0.0009 0.056 14.9 0.7 1 23 872 894 872 894 0.97 31 31 0.0022 0.14 13.6 0.5 1 23 900 922 900 922 0.97
Sequence Information
- Coding Sequence
- ATGTTCAGCAACTTGAAGAAGCACaagttaatacacaccggcgaaaaaCTCTTCCGTTGTAACATTTGCGATTACAGATGCGAAGAGGTGGGAAATTTGAAAAGGCACATGTACAcccacaccggcgagaagcctttCAGTTGCGACCTCTGCGACTACAAGAGCACACACTTCGCAAATCTGAAGAAGCACCAgctaacgcacaccggcgagaatcCTTTCGGTTGTACTttctgcgattataagtgcaaAGATTTCGGGAAATTGAAAAGGCACGTCTTAACGCACACCGCCGAGAAAAGTTGTAacatttgcgattataaatgcaagGATGTTGGAAACTTGAAAAGGCACAACCTAATCCACACGGGCgaaaagccgttcagttgcgatgtTTGCGATTACAGGTGCCGACAGAGCTCTAGCTTGAAGTGCCACATGTTAACACACACCGGTGAAAACCCTTTCAGTTGTAATGTTTGCAATTATAAATGCAGAGGGGTTGGAAATTTGAAGAGGCATAAGCTGACGCACagcggcgagaagccgttcagttgtaatctctgcgattacaaatgcgcACAGTTCGGACATTTGAAAACGCACAAGCTGACACACACCGACGGGGAGCCGCAGAGTTGTAAAATTTGCGGTTATCAAACCGGAAATGCTAAAAGCTTCAATCGACATATGCGAGCACACATCGGCGAAAAGCCGTTCACTGGCAATGATACTTGCGTTTGTAAATGTGAAGAGATGGGAAATTCGAAAAGACGCAAGTCAATCCACGCCGCCGACGAAAAGCCTTCCAGGTGTAACATTTGCGATTATAGATGCAAAGGCATCGGAAATTTGAAGAGGCACAAGCTGACACACACGGGCGAGAAGCCATACGGTTGTAATCTTTGCGAATATAAATGCACACAGTTCGGAAATTTAAAGAAGCACAAGTTGACACACACCAGCGTGAAGCCGCTCTGTTGTAATACTTGCGGTTATCAAACCGGAAGCACTAGTGGTTTAAGTCGGCATATGCGAGCACACGTAAGCGAAAAGCCGTTGAGTTGTGGTATTTGCGAGTACAAAACTCGACAcaatgaaaatttgaagaatCACAGGCGAAcacataccggcgagaaaccgttcggctgCGACCTTTGCGAATATAAATGCGCGTTCCGGGGAAATTTGCAAAAGCACATGCTAACGCACACGGGCGAGAAGCCGTACAGTTGTAATGCTTGCGATTATCAGACTCGACAGCGCGGTAATTTGAACCTGCATATATGCCCACGGATTGTCAAGCCTGTAACCAAGAAAACGTACAAACAGAGCACAAGCGGCAAGAAAACGTTCGGTTGTGAAATTTGGAATTACAAAAGCACAGATTTAGGAAATCTGAGAAAGCACATGTTagcacacaccgacgagaagccgttcagttgtaacctttgcgattacaaaagcTCACAGATCAGATATTTGGAGAAGCACAAGATAAAACACACTAGCGAGAAGCCTTTcggttgcgatctttgcgaatTCAAATGCCGCCGGAGCGGTGAGTTGAAGAATCACAAgttaacacacaccggcgagaggcccttcagttgtgatctttgtggTTACGAATGCCGACGCAGCGACGATTTGAAGAAACACATgttaacacacaccggcgagaagccgttcacttGCAGAATTTGCGATTACCGAGCTCGAGACAAGGGAGTTTTGAAAACTCACATTCtcatacacaccggcgagaagcctttcagttgtgatctttgcgattacaaatgccgatcaaccgtttatttaaagaaacacAAGTTAACTCACACCGGTGAGAAGCAGTACAGCTGTGATATTTGCGATTACAAGAGCCTGCACTTCGAAAATTTGAGAAGGCACAAGGTGAGACACACCAGCGAGAAGCctttcggttgtgatctttgtgaTTACAAGTTCCGACGAAACGTGGAGTTGAAGAAACACATGTTAACGCACACCGGTGAGAAACCGCTCAGCTGTGATATTTGCGGTAAAAGATTCCTGCATAGCGGAAGTTTAAAATACCACGTGCtaacacacaccggcgagaagccgttcacttGCAATGTCTGCGGTTACCAAGCCCGAGAGAGTGGAGTCTTGAAGAAGCATATGCGAATgcacaccggcgaaaagccgGTCAGTTGTGATATTTGCGATAAGAAATTTCGACgcagagaaaatttgaaacgtcacTTGcgaatacacaccggcgagaaaccgttcagttgtaatATTTGCGGTTACCAAAGCCAACAAAGCAAATATCTGAAAAAGCACGTGCTAATacacaccgatgagaagccgttcactTGCAATTTTTGCAGTTACGTGTGCCGAGACAAGGGAAGATTGAAGGAGCACGCGCgaaagcacaccgacgagaagccgttcagttgtgatctttgcgatttcaAATGCCGATATTCCGTAAGTCTGAAAGGCCACACGCTAATCCACACTGACGAGAagccgtttagttgtgatctttgtcGTTTCAAAACCagacagtccggaaatttggaGAAGCATAGGCTAACGCATACTGGCGAGAAgacgttcagttgtgatctttgcgattacaaatctATACGGCTCGGAAATTTGAAGAGGCACAAATTAATACATACCGGCGAGTTGCCATTTTTTTGTGGTGTTTGCAGCCGAGAATTCGGACAAATCACACTTTTGAAACAACACATGCGAGATCATGACATCCAGAAGCCATAA
- Protein Sequence
- MFSNLKKHKLIHTGEKLFRCNICDYRCEEVGNLKRHMYTHTGEKPFSCDLCDYKSTHFANLKKHQLTHTGENPFGCTFCDYKCKDFGKLKRHVLTHTAEKSCNICDYKCKDVGNLKRHNLIHTGEKPFSCDVCDYRCRQSSSLKCHMLTHTGENPFSCNVCNYKCRGVGNLKRHKLTHSGEKPFSCNLCDYKCAQFGHLKTHKLTHTDGEPQSCKICGYQTGNAKSFNRHMRAHIGEKPFTGNDTCVCKCEEMGNSKRRKSIHAADEKPSRCNICDYRCKGIGNLKRHKLTHTGEKPYGCNLCEYKCTQFGNLKKHKLTHTSVKPLCCNTCGYQTGSTSGLSRHMRAHVSEKPLSCGICEYKTRHNENLKNHRRTHTGEKPFGCDLCEYKCAFRGNLQKHMLTHTGEKPYSCNACDYQTRQRGNLNLHICPRIVKPVTKKTYKQSTSGKKTFGCEIWNYKSTDLGNLRKHMLAHTDEKPFSCNLCDYKSSQIRYLEKHKIKHTSEKPFGCDLCEFKCRRSGELKNHKLTHTGERPFSCDLCGYECRRSDDLKKHMLTHTGEKPFTCRICDYRARDKGVLKTHILIHTGEKPFSCDLCDYKCRSTVYLKKHKLTHTGEKQYSCDICDYKSLHFENLRRHKVRHTSEKPFGCDLCDYKFRRNVELKKHMLTHTGEKPLSCDICGKRFLHSGSLKYHVLTHTGEKPFTCNVCGYQARESGVLKKHMRMHTGEKPVSCDICDKKFRRRENLKRHLRIHTGEKPFSCNICGYQSQQSKYLKKHVLIHTDEKPFTCNFCSYVCRDKGRLKEHARKHTDEKPFSCDLCDFKCRYSVSLKGHTLIHTDEKPFSCDLCRFKTRQSGNLEKHRLTHTGEKTFSCDLCDYKSIRLGNLKRHKLIHTGELPFFCGVCSREFGQITLLKQHMRDHDIQKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258831;
- 90% Identity
- iTF_01258831;
- 80% Identity
- iTF_01258831;